Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01098 ATGGAAAATCAATTCTTTTCAAACACAAATGTTCATTTTGAACAATCACAACAACCTTCTTCAATGCCAACATGGCAATCACTTTCATCATCAGAACAACAACAAAACCAAGATTGTTTTTACACACCAACAACATGGGAAAAATCAACAACAGATCAATGTGTTCATAATCAATTTGATTCAGCACTAAGTTCAATGGTATCTTCACCTGCAGCATCAAATTCCAACATGTCAAATGAAAACTTTGTCATTAGAGAATTAATTGGTAAATTAGGAAACATTGGTAATTGTTCTGATGAGATCTCACAAACTTTAATTGCTACAAATTCATACAATACTTCATGTTACAACACACCTTTAAATTCTCCACCTAAATTGAACATTCAAACAATGGCTATGAACTCAACTGTTGCAGAATTTTCAACTGATCCTGGTTTTGCAGAAAGAGCTGCTAAATTTTCTTGCTTTGGAAGTAGAAGTTTCAATGGAAGAACAACACAAACACAATTGAATCAAACTCAAAGATCTACTCCATTAATGGAAAATGGAAAACTTTCTAGAGTTTCAAGTAGTCCATCATTGAAAGAACTTGGATCTCAATCTCAAATTGTTATACAAGAAAATATGAATTGTTCTTCACAATTGCAGGATCAAATTGAAGTTAATAATAATTCTCAAGAAGAATCAACAATCTCTGAAAATGGTGTTAAACCTTCTCCTTATGTGAATTCAAGAAAAAGAAAAGTTTCTTCCAAAGGAAAAACCAAAGAAAATTCAACTTCTAGTAATCCTCCAATGGTTTGTGAAGGTGTTGAAGATTCAAATTCAAAGAGAATGAAAACAAATGAAGGTGAAAAAATTGAAAATGGTAAAGTGAAAGCAGAGGAAGAGATAAAAGGGGGTACAAATAGTAATAATGGAGGTGATGAAAAACAGAATAAGAGTAACATAAAACCTCCTGAGGCTCCTAAGGATTACATTCATGTTAGAGCAAGAAGAGGTCAGGCTACTGATAGCCATAGTCTTGCTGAAAGAGTTAGGAGGGAGAAAATTAGTGAAAGGATGAAGCTTCTACAAGATCTTGTACCTGGCTGCAATAAGGTAACTGGAAAAGCACTCATGCTTGATGAAATTATAAACTATGTTCAATCATTGCAGCGCCAAGTTGAGTTTCTATCTATGAAATTGGCTACTGTGAACACAAGGGTGGATTTAAGTATTGAGAGTCTAATCTCAAAAGATATATTTCAATCAAATAATTCTATGGCACACCCAATATTCCCACATGATTCCTCAGCACCATCCTATTATGGGCAGCAAAACCCAGCAATTCACAATAACATTTCTAATGGAAATGTGACCCACAACTCAGTGGACCAATTAGAAAATGGTTTATTCCAAAACCTTGGCATGCACTTATCTTCACTAAGTGGATTTAATGATGCTGCTTCTCAGGTAATCTACTACTTCTAG 1473 0.3408 MENQFFSNTNVHFEQSQQPSSMPTWQSLSSSEQQQNQDCFYTPTTWEKSTTDQCVHNQFDSALSSMVSSPAASNSNMSNENFVIRELIGKLGNIGNCSDEISQTLIATNSYNTSCYNTPLNSPPKLNIQTMAMNSTVAEFSTDPGFAERAAKFSCFGSRSFNGRTTQTQLNQTQRSTPLMENGKLSRVSSSPSLKELGSQSQIVIQENMNCSSQLQDQIEVNNNSQEESTISENGVKPSPYVNSRKRKVSSKGKTKENSTSSNPPMVCEGVEDSNSKRMKTNEGEKIENGKVKAEEEIKGGTNSNNGGDEKQNKSNIKPPEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLATVNTRVDLSIESLISKDIFQSNNSMAHPIFPHDSSAPSYYGQQNPAIHNNISNGNVTHNSVDQLENGLFQNLGMHLSSLSGFNDAASQVIYYF 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01098 490 MobiDBLite consensus disorder prediction 299 313 - -
Trre14g01098 490 MobiDBLite consensus disorder prediction 164 199 - -
Trre14g01098 490 SMART finulus 341 391 IPR011598 GO:0046983
Trre14g01098 490 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 218 450 IPR024097 GO:0006355
Trre14g01098 490 FunFam Basic helix-loop-helix transcription factor 332 404 - -
Trre14g01098 490 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 333 403 IPR036638 GO:0046983
Trre14g01098 490 MobiDBLite consensus disorder prediction 1 29 - -
Trre14g01098 490 Coils Coil 382 402 - -
Trre14g01098 490 Gene3D - 332 407 IPR036638 GO:0046983
Trre14g01098 490 MobiDBLite consensus disorder prediction 220 239 - -
Trre14g01098 490 CDD bHLH_AtBPE_like 325 410 - -
Trre14g01098 490 Pfam Helix-loop-helix DNA-binding domain 339 386 IPR011598 GO:0046983
Trre14g01098 490 MobiDBLite consensus disorder prediction 220 323 - -
Trre14g01098 490 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 335 385 IPR011598 GO:0046983
Trre14g01098 490 MobiDBLite consensus disorder prediction 273 298 - -
Trre14g01098 490 MobiDBLite consensus disorder prediction 255 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01098 Trre-Chr14 9256540 9258928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01098 1 490 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 45.205 7.37e-108 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre14g01098 HLH 3.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01098 - - tpra:123889043 863.603