Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01082 ATGATAAATTTCCATATGGAATTTTTATCCGTAAGTATTAATTTAGGTAAAATCTTTGAAGACGAAGAAGCTGTAAAAATGATCAACAATGATCACTATTTATTTAATCTTGGTAATGGCAATGTCTTTGGCTACTATACCATTAACGTTGATCACTATGGTAATGTGGAAAGATTTATCAACCATGGTTGTTCTCTAAATTTGTTTTGTCAAAGAGTTCTTTATGATCATGATGATGGTAGGATTCCCCACATGATGCTATTTGCAGCCAAGGATATTCCAAAAATGCAAGAACTGACTTTGGATTACCATTACGAAATTGATCAAGTGATTGATTCAAACGTAAAGGTAAAGAAGAAGAAAACCTATTGTGGTGCTTTGGAATGTTGTGGCAGGTTGTATTATTCAAGACTTTCTAGTAAAAGGTGA 429 0.3263 MINFHMEFLSVSINLGKIFEDEEAVKMINNDHYLFNLGNGNVFGYYTINVDHYGNVERFINHGCSLNLFCQRVLYDHDDGRIPHMMLFAAKDIPKMQELTLDYHYEIDQVIDSNVKVKKKKTYCGALECCGRLYYSRLSSKR 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01082 142 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 15 126 - -
Trre14g01082 142 SMART set_7 2 110 IPR001214 GO:0005515
Trre14g01082 142 ProSiteProfiles SET domain profile. 1 104 IPR001214 GO:0005515
Trre14g01082 142 Pfam SET domain 41 103 IPR001214 GO:0005515
Trre14g01082 142 Gene3D SET domain 10 134 IPR046341 -
Trre14g01082 142 SUPERFAMILY SET domain 15 108 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01082 Trre-Chr14 9100856 9101284 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01082 46 134 EF-hand Containing Proteins AT5G13960 50.562 2.75e-22 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre14g01082 SET 2.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01082 - K11420 psat:127129315 162.155