Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01079 ATGGAGGCTGTCAACAATGGTGAAATTGAAACACAAGAATATTTTGTCCCAACAAAAGTGAGTTCTAGGCTTAAAAATCAGCCAAATATTCATTATGACATTTACCAAGAGAGTGGTAACAAATTTGTTGAAAAGAGAGATATTAATTTTGAAGAGTATTCTATTGAGAAGAGAACAAAGCTTGACCCCTTAGTGCAAAATCATCAAGCATTGGTTTCAAAAATAGATGAAAGTGGTTTATTTGTTTTTGATGAACTTGACATGAGAGGCCTTTTGTCCTTAAAAGAAACATTCAGACTTGCCAATCTTCGTAGTCTTGCTCTTGCTAAGAAAGAGAAGAATCAGAGTAAGAATCAACGAAAGATGATGCGTGACAAAAAGAGTGTTGACACATCTTTTATGACTAGCAAGGTTGATAAAAATGGCATTGAAGGTGAGTACATTCCAGGACTCGCAACATCAAGATATCTAATCAATAAGCTTCAAGAACTGGCTAAAGTTGGCATGGATAAGGTTAATTTTATGAAAGGACAAGTTTCTATAGCTCTTTCTTCTTCTCCAAGTTTGGTATGCAAGGACATTAGTGATGGACAAGAAGCTATAAACATAATTGCAACCAATGAATTCGATGATCCTCCGGTTGCACCTACAGGTTTTACATATATTATATCAAATCAAGTTGCAAAACACGTCAAAGTTCCATCCAGGACTTCTGGATGTCACTGCCAAGGAAGTTGTAGAAATATAAAAACGTGCTCTTGTGTTAATTATCTTAAAGGCTCTAAGTTTCCATATAGTAATGGCAGATTGATCGAGCCTCGAGATATTGTAGTCGAATGTGGGCCACAATGCGGATGTGGACCTAATTGTGAAAATAAAATTTCTCAAAAGGGTTTGAAATATCGACTTGAAGTTTATCGTACAACCCAAAAAGGTTGGGCTGTGAGAACATGGGACTTTATTCCCTCAGGTGCACCAGTAATAGAGTATATTGGTGTACTTGATAGGGATGATAAGTTAGATAATTCTGTTGAAAATGATTACATATTTGACATTGATTGTTTGCACACAATTAATGGGGTAGATGGAAGAGAGCAACGGTTGGGTGGTGTATCACTCCCTCCTACTAAAGAAATTTCTAAAAAAAGGGACAAGTATCTGAAAAAGGATCCAGAATTTTGTATAGATGCTGGTTCTTTTGGTAATGTTTCAAGATTTATTAATCATGGATGTGCACCAAACCTCTTTGTACAATGTGTTCTCAGTAACCACTTAGATGTTAAACTAGCTCGTGTGGTCTTATTTGCAGCAAAAGACATAACTCCCTATCAGGAGCTCACCTATGACTATGGTTATAGACTTGATAGTGTGGTTGGTCCTGATGGAAATATTAAGCAATTGCAATGTCATTGTGGTGCAGAGGAATGTCGTAAGCGCTTGTACTAA 1446 0.3658 MEAVNNGEIETQEYFVPTKVSSRLKNQPNIHYDIYQESGNKFVEKRDINFEEYSIEKRTKLDPLVQNHQALVSKIDESGLFVFDELDMRGLLSLKETFRLANLRSLALAKKEKNQSKNQRKMMRDKKSVDTSFMTSKVDKNGIEGEYIPGLATSRYLINKLQELAKVGMDKVNFMKGQVSIALSSSPSLVCKDISDGQEAINIIATNEFDDPPVAPTGFTYIISNQVAKHVKVPSRTSGCHCQGSCRNIKTCSCVNYLKGSKFPYSNGRLIEPRDIVVECGPQCGCGPNCENKISQKGLKYRLEVYRTTQKGWAVRTWDFIPSGAPVIEYIGVLDRDDKLDNSVENDYIFDIDCLHTINGVDGREQRLGGVSLPPTKEISKKRDKYLKKDPEFCIDAGSFGNVSRFINHGCAPNLFVQCVLSNHLDVKLARVVLFAAKDITPYQELTYDYGYRLDSVVGPDGNIKQLQCHCGAEECRKRLY 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01079 481 SMART preset_2 191 285 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre14g01079 481 SMART PostSET_3 465 481 IPR003616 -
Trre14g01079 481 ProSiteProfiles SET domain profile. 301 451 IPR001214 GO:0005515
Trre14g01079 481 Pfam SET domain 312 451 IPR001214 GO:0005515
Trre14g01079 481 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 102 474 - -
Trre14g01079 481 ProSiteProfiles Post-SET domain profile. 465 481 IPR003616 -
Trre14g01079 481 Pfam Pre-SET motif 194 293 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre14g01079 481 ProSiteProfiles Pre-SET domain profile. 238 298 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre14g01079 481 SUPERFAMILY SET domain 186 457 IPR046341 -
Trre14g01079 481 Gene3D SET domain 184 481 IPR046341 -
Trre14g01079 481 Coils Coil 106 126 - -
Trre14g01079 481 SMART set_7 301 457 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01079 Trre-Chr14 9073886 9077939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01079 148 481 EF-hand Containing Proteins AT5G13960 53.550 4.39e-129 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre14g01079 SET 1.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01079 K11420 - tpra:123892021 854.744