Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01050 ATGGGTGGTGTGGATAATAGAAAGTGGAAAGATTTATTTAAGAAGAAAAAGAAGAACAAGAATGGGTCTATATGGTCCATTTTCATGCATGCTGATGTGGAAGATTGGTTCCTTATGGTTTTAGGTACCATTGGAGCAATTGGTGAAGGATTCACTTTTCCTTTGATTTTATATATTAGTAGCCGCATGATCAATAATATTGGGAGTTCATCTACCATGGAACCAGACACTTTCATCCATAACATCAATAAGAATGCACTTGCTTGGTTATATTTGGCCTGTGCATCTTTTGTTATTTGCTTCCTTGAGGGTTATTGTTGGACAAGGACAAGTGGGAGACAAGCTACAAGAATGAGATGCAAGTATCTGAAAGCAGTTCTTAGACAAGAAGTTTCTTACTTTGATTTGCAGGTCACAAGTACCTCAGAAATCATCACTAGTGTCTCTAATGACACTCTTATAATTCAAGATGTTCTTAGTGAAAAGGTTCCAAATTTGTTGATGAACATTTCATTGTTCATTGGGAGCTATATAGTGGCATTTACAATGCTATGGAGATTGGCAATTGTAGTATTCCCATTTTTAATTCTTCTAGTGATCCCTGGATTAATCTATGGCATAACATTGATGAGTTTATCAAGCAAGATAAGGGAAGAGTACAATCAAGCTGACAAAATAGTAGAACAAACAATATCTTCCATTAGAACTGTTTATTCATTTGTGGGAGAAAACAAATCTATGATTGCTTTCTCTAATGCATTACAAGGGACTGTTAATTTGGGATTAAAACAAGGATTAGCTAAAGGTTTAGCTATTGGAAGCAATGGTTTTGTGTTTGCAATTTGGTCTTTCATGTGCTATTATGGAAGTAGATTGGTGATGTACCATGGTGCTAAAGGAGGGACAGTTTTTGCTGTTGGAGCAACCATAGCACTTGGTGGATTAGGATTAGGATCAAGTTTATCAAGCCTAAGGAATTTCTCAGAAGCAAGTTCAGCTGGTGAAAGAATCAAGAAAGTAATATCAAGAATTCCAAACATAGATTCCAACAATACAAAAGGAGAAATATTAGAAAAAATTTCAGGAGAAGTTGAATTTAACAGCATAGAATTTGCATATCCAACAAGACCAGAAACAATTATCCTTAAAAACTTATGTCTCAAAATTCCAGCTGGAAAAACAGTAGCATTGGTTGGTGAAAGTGGTTCAGGAAAATCAACATTGATAGCATTATTGCAAAGATTTTATGATCCAATTGGTGGTGAAATACTTGTTGATGGTGTTTCTATAAATAAGTTGAATATTAAGTGGCTAAGGTCAATTATGGGATTGGTTAGTCAAGAACCTTCTCTATTTGCAACAAGTATTAAAGAGAATATAATTTTTGGTAAGGAAGATGCTACTGATGATGAGATTGTTGAAGCTGCTACAATTTGTAATGCTCATGATTTCATTTCATTGCTTCCTCAAGGTTACAATACTCAGGTGGGAGAAAGTGGGGTTCAATTATCAGGTGGACAAAAACAGAGGATCGCAATTGCTCGAGCAATAATAAAAAAACCAACGCTCCTTCTTTTGGATGAAGCAACAAGCGCCTTAGACACTAAATCAGAACAACTTGTTCAACAAGCACTCGACAATGCAACAATCGGCTGCACCACCATCGTAATCGCCCACCGCCTCTCCACAATCCAAAATGCCAACATAATCGCCATCGTGCATGGTGGAAAAATCACTGAGATTGGATCACACAACGAACTTCTCCAAAACAACACTGGCATCTACTCATCTCTTGTCCACAACGAACAAACCGACGAGGGAAGAGTAGAAGAAGAAAATGTTACAACTACTTCCACAAAAACGGACCCACAAACCACGTGGTTTGTGGACCATACCATTTTAGCGGAAGAAGAAAAAAATAATATTAATAATATTAATATCAATGAAGGTAAAATGGTGTCGTTTCGAAGATTACTTTTGTTAAATGCTCCTGAATGGAAACAAGCAGTTTTTGGATGTTTGAATGCAATGGTGTTTGGTGCAATTCAACCGGTTTATGCATATGCAATGGGTTCATTGATATTTATTTATTTTGATACGGATTATGAGGAGATAAAAAACAAGACTAAGGTCTATTCACTTTGCTTTTTGGGTCTCTTTGTGATAACTTTGGTGGTTAATGTTGGACAACATTATAACTTTGCATATATGGGAGAGTATTTGACTAAACGTGTAAGGGAAAGCATGCTTTCTAAGATAATCACTTTTGAAGTTGCTTGGTTTGATCGTGATGAAAATTCTAGTGGTGCTATTTGTTCTCGACTTGCTAATGATGCTAATGTGGTGAGGTCCTTAGTTGGTGATAGAATGTCTTTGTTGGTACAAACTTTCTCAGCAGTAGTGACAGCATACACTATGGGTCTAGTCATTTCATGGAGGCTCAACATAGTTATGATATCTATTCAACCAATTTTAATAGCTTGCTTTTATACTAGGAGTGTGTTACTCAAAAGCATGTCAAGCAAGTCCACTAAGGCCCAACAAGAAAGTAGCAAGTTAGCTTGTGAAGCCGTTTCAAATCTTAGAACCATCACTGCCTTTTCTTCTCAAGAAAGAATACTCAAAATGCTTGAAATGGCCCAACAAGGCCCAATTCAAGAGAATTTTCGTCAATCGTGGTTCGCGGGTATTGGACTTGGGCTTTCACAATTTCTTATGTCTTGTTCTTGGGCCGTGAATTATTGGTACGGCGGTAAGCTTATCGTTGATGGATACATAACAAAGAAAGCGTTGTTTGAGAGCTTTATGGTTGTGGTGAGTACAGGTCGGGTTATAGCCGATGCTGGAAGCATGACTAAAGACCTTGTCAAAGGTGCTGATGTTGTGAGCTCAATTTTTGACATCTTAGATCGACATACAAAAATCGAGCCAGACAACCCTGGTGGGTTTAAGCCCGAGACTTTAATGGGCCAAATAGAATTTCATGACGTGCATTTTTCATACCCTGCTAGGCCCAATGTAGTTATCTTTAAAGATTTTTCAATTAAAATTGAAGCGGGGAAATCAACGGCATTAGTAGGCCAAAGTGGGTCTGGAAAATCAACCATCATAACATTAATTGAGAGATTCTATGACCCACTAAAAGGAAGTGTGACAATAGATGATATGAACATAAAATCATATAACCTAAAGTCACTAAGAAAACACATAGCACTTGTGAGCCAAGAGCCAACATTGATCAATGGGACCATAAGAGACAACATTGCATATGGAACAGCATGTGACAACATTGATGAAATTGAGATCATAGAGGCAGCAAGAATAGCCAATGCTCATGATTTCATATCTAGCTTAAAAGATGGGTATGAGACATGGTGTGGTGATAAAGGGGTGCAACTTTCTGGAGGTCAAAAACAAAGGATAGCAATAGCTAGAGCCATGTTGAAGAATCCAAAGGTATTGCTACTAGATGAGGCAACAAGTGCACTAGATAATAATTCAGAAAAGGTAGTGCAAGATGCATTGAATAAGGTAATGGTGGGAAGGACAAGTGTGGTTGTGGCACATAGGTTGAGTACCATACACAATTGTGATGTTATTGCTGTTTTAGATAAAGGGAAAATGGTTGAGATTGGAAGTCACAAAACTTTGTTGGCTAAAGGACCTTGTGGTGCTTATTACTCTTTGGTACATCTTCAAACTAAACATGCATCTACAACCAAAGACACTACTAATTAA 3738 0.3732 MGGVDNRKWKDLFKKKKKNKNGSIWSIFMHADVEDWFLMVLGTIGAIGEGFTFPLILYISSRMINNIGSSSTMEPDTFIHNINKNALAWLYLACASFVICFLEGYCWTRTSGRQATRMRCKYLKAVLRQEVSYFDLQVTSTSEIITSVSNDTLIIQDVLSEKVPNLLMNISLFIGSYIVAFTMLWRLAIVVFPFLILLVIPGLIYGITLMSLSSKIREEYNQADKIVEQTISSIRTVYSFVGENKSMIAFSNALQGTVNLGLKQGLAKGLAIGSNGFVFAIWSFMCYYGSRLVMYHGAKGGTVFAVGATIALGGLGLGSSLSSLRNFSEASSAGERIKKVISRIPNIDSNNTKGEILEKISGEVEFNSIEFAYPTRPETIILKNLCLKIPAGKTVALVGESGSGKSTLIALLQRFYDPIGGEILVDGVSINKLNIKWLRSIMGLVSQEPSLFATSIKENIIFGKEDATDDEIVEAATICNAHDFISLLPQGYNTQVGESGVQLSGGQKQRIAIARAIIKKPTLLLLDEATSALDTKSEQLVQQALDNATIGCTTIVIAHRLSTIQNANIIAIVHGGKITEIGSHNELLQNNTGIYSSLVHNEQTDEGRVEEENVTTTSTKTDPQTTWFVDHTILAEEEKNNINNININEGKMVSFRRLLLLNAPEWKQAVFGCLNAMVFGAIQPVYAYAMGSLIFIYFDTDYEEIKNKTKVYSLCFLGLFVITLVVNVGQHYNFAYMGEYLTKRVRESMLSKIITFEVAWFDRDENSSGAICSRLANDANVVRSLVGDRMSLLVQTFSAVVTAYTMGLVISWRLNIVMISIQPILIACFYTRSVLLKSMSSKSTKAQQESSKLACEAVSNLRTITAFSSQERILKMLEMAQQGPIQENFRQSWFAGIGLGLSQFLMSCSWAVNYWYGGKLIVDGYITKKALFESFMVVVSTGRVIADAGSMTKDLVKGADVVSSIFDILDRHTKIEPDNPGGFKPETLMGQIEFHDVHFSYPARPNVVIFKDFSIKIEAGKSTALVGQSGSGKSTIITLIERFYDPLKGSVTIDDMNIKSYNLKSLRKHIALVSQEPTLINGTIRDNIAYGTACDNIDEIEIIEAARIANAHDFISSLKDGYETWCGDKGVQLSGGQKQRIAIARAMLKNPKVLLLDEATSALDNNSEKVVQDALNKVMVGRTSVVVAHRLSTIHNCDVIAVLDKGKMVEIGSHKTLLAKGPCGAYYSLVHLQTKHASTTKDTTN 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01050 1245 Pfam ABC transporter transmembrane region 39 306 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre14g01050 1245 Pfam ABC transporter transmembrane region 672 939 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre14g01050 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 600 IPR027417 -
Trre14g01050 1245 Gene3D - 354 612 IPR027417 -
Trre14g01050 1245 Pfam ABC transporter 382 531 IPR003439 GO:0005524
Trre14g01050 1245 CDD ABC_MTABC3_MDL1_MDL2 364 601 - -
Trre14g01050 1245 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 676 957 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre14g01050 1245 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 329 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre14g01050 1245 CDD ABC_6TM_Pgp_ABCB1_D2_like 659 975 - -
Trre14g01050 1245 PANTHER ABC TRANSPORTER B FAMILY 14 728 IPR039421 -
Trre14g01050 1245 ProSitePatterns ABC transporters family signature. 503 517 IPR017871 GO:0005524|GO:0016887
Trre14g01050 1245 SMART AAA_5 391 579 IPR003593 GO:0016887
Trre14g01050 1245 SMART AAA_5 1019 1213 IPR003593 GO:0016887
Trre14g01050 1245 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 992 1230 IPR003439 GO:0005524
Trre14g01050 1245 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 364 600 IPR003439 GO:0005524
Trre14g01050 1245 SUPERFAMILY ABC transporter transmembrane region 30 345 IPR036640 GO:0005524|GO:0016020
Trre14g01050 1245 FunFam ABC transporter B family member 1 26 363 - -
Trre14g01050 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 983 1233 IPR027417 -
Trre14g01050 1245 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 306 - -
Trre14g01050 1245 CDD ABC_MTABC3_MDL1_MDL2 992 1233 - -
Trre14g01050 1245 Gene3D - 982 1244 IPR027417 -
Trre14g01050 1245 Pfam ABC transporter 1011 1161 IPR003439 GO:0005524
Trre14g01050 1245 FunFam Putative ABC transporter B family member 8 635 980 - -
Trre14g01050 1245 SUPERFAMILY ABC transporter transmembrane region 656 976 IPR036640 GO:0005524|GO:0016020
Trre14g01050 1245 ProSitePatterns ABC transporters family signature. 1133 1147 IPR017871 GO:0005524|GO:0016887
Trre14g01050 1245 Gene3D ABC transporter type 1, transmembrane domain 26 958 IPR036640 GO:0005524|GO:0016020
Trre14g01050 1245 FunFam ABC transporter B family member 4 354 610 - -
Trre14g01050 1245 FunFam ABC transporter B family member 4 982 1240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01050 Trre-Chr14 8891066 8900249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01050 15 1233 Calmodulin-binding Proteins AT2G36910 42.628 0.0 1022