LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre14g01028	ATGTCGGCAGCGTCGCCGTCTCCGGCTTCCTCCAACGCCGTACCACCGCCACAAACACTACCTTCTAATACCACTCGACCGCCTTCCTCATCCACTGCTCCGTCGCCTAACACTTCACCTTCACCTCCACCACCGCAACAACCCCCTTCACCTCCTCCAGCTGTGCCGTCGTCTCCTCGGCCTTCACCTCCATCGCCGCCTCCTGTAGCTCCTACTCCAACCCCGCCAACACGCCCTCCTCCATCGCCCCAATCGCCACCACCACCGCAATCACCCGTTCCTCCAAGAAGTTCTCCTCCGCCTTCACCACCAATAGCACCGTCGCCACCACCATCTTCTCCAGCTCGTCCATCACCACCACCACCACCACCACCACCACAATCAAGAAGCCCTCCCCCGTCTTCTCCACCAATAGCACCGTCAAATCCACCCCAATCATCTCCACCGGGAAATTCACCCCCTTCTCCCACCGCAACACCACCATCCCCCAATAACTCATCTCAAACTCCACCACCAGCATCATCACCGCCGTCACCATTACAACCACCGTCATCATTACCATCACCGTCACCATCACCATCATCAATCAGTCCTCCTGCCAGACCTAGTTCGCCACCACCTCGGCATTCAAATTCAACACCAACGGTATCACCACCACCACCTCCTCCATCACCCTCAATCATTCAACTGTCGCCTCCGCCGCAGAATGGACCAGAAAGATCAAGCCCTGAAACCGGAAGCAGTGGTGGAATTGGTTCTGGTGGTGTAGTGGCTATAGCTGTATTTGGTGGAATTCTATTGCTTGGTTTCATTGGAGTTGCTATCTGGTGTTTGAGGAGGCAAAAGAAAAAGGATTCTCCTAATGATGGTTATGTCATGCCTCTCACTCTTCCTTCCTCAACTGAATCAGATTCGTCCTTTTTAAAGATACACGCTGCCTCTGATCCTCTTGTAAGAAGTGGATCTAGCAGTGATGTTGTGCATACACCATCTGACCCTGGTGGTGGAATGGGCCACTCAAGGAACTGGTTTTCATATGAAGAACTAATCAAGGCCACAAATGGTTTCTCAACTCTGAATCTTTTGGGAGAAGGTGGATTTGGTTCTGTGTATAAAGGATGTTTACCTGATGGCAGAGAGATAGCAGTGAAGCAGCTCAAAATTGGTGGGAGTCAAGGGGAGAGAGAATTCAAAGCTGAAGTTGATATAATTAGTCGCATACATCATCGCCATTTGGTTTCTTTAGTTGGATACTGCATTCAAGATGACAGAAAAATACTTGTCTATGACTATGTCCCTAACAACACACTTCATTTTCATCTACATGAGGAAGGTCAACCTGTGCTGGAATGGGAAAAACGTGTTAAAATCGCAGCTGGTGCAGCTCGAGGAATAGCTTATCTCCATGAAGACTGCAATCCTCGAATTATTCACAGAGATATCAAGCCATCAAACATTCTTTTGGATCACAACTATGAAGCTCAAGTCTCAGATTTTGGTCTAGCGAAATTAGCTCTAGATGCAAATACACATGTAACGACGCGCGTCATGGGAACTTTTGGGTATGTTGCGCCTGAATATGCGTCAAGTGGAAAATTGACAGACAAGTCTGATGTATATTCTTTTGGAGTTGTGCTTTTGGAGCTCATTACCGGACGGATGCCAGTAGATCCATCACAAATGGGAGATGAGAGTCTAGTTGAATGGGCTCGACCTTTGCTAAGTGATGCACTTGAAACTGGGGAATTTGAGAGTTTCGTAGATCCAAAGCTAGAAAAGAACTACATTGATAGTGAAATGTTTTGCATGATTGAAGTTGCTGCTGCTTGTGTTCGGCATTCAGCTTCTAAGAGACCTCGCATGGGACAGGTTGTTAGAGCTTTCGAAAGTTTAGCAACTTCAGATCTAACGAACGGAATGCGAGTTGGTGAAAGCCGGGCATTTGACTCTGCTGAACAATCTGAAGAAATAAGATTGTTTCGGAGGATGGCATTCGGTAGTCAAAATTATAGCACAGACTATTTTAATCACTCTAGTTTGCGTTTGTAA	2049	0.4763	MSAASPSPASSNAVPPPQTLPSNTTRPPSSSTAPSPNTSPSPPPPQQPPSPPPAVPSSPRPSPPSPPPVAPTPTPPTRPPPSPQSPPPPQSPVPPRSSPPPSPPIAPSPPPSSPARPSPPPPPPPPQSRSPPPSSPPIAPSNPPQSSPPGNSPPSPTATPPSPNNSSQTPPPASSPPSPLQPPSSLPSPSPSPSSISPPARPSSPPPRHSNSTPTVSPPPPPPSPSIIQLSPPPQNGPERSSPETGSSGGIGSGGVVAIAVFGGILLLGFIGVAIWCLRRQKKKDSPNDGYVMPLTLPSSTESDSSFLKIHAASDPLVRSGSSSDVVHTPSDPGGGMGHSRNWFSYEELIKATNGFSTLNLLGEGGFGSVYKGCLPDGREIAVKQLKIGGSQGEREFKAEVDIISRIHHRHLVSLVGYCIQDDRKILVYDYVPNNTLHFHLHEEGQPVLEWEKRVKIAAGAARGIAYLHEDCNPRIIHRDIKPSNILLDHNYEAQVSDFGLAKLALDANTHVTTRVMGTFGYVAPEYASSGKLTDKSDVYSFGVVLLELITGRMPVDPSQMGDESLVEWARPLLSDALETGEFESFVDPKLEKNYIDSEMFCMIEVAAACVRHSASKRPRMGQVVRAFESLATSDLTNGMRVGESRAFDSAEQSEEIRLFRRMAFGSQNYSTDYFNHSSLRL	682

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre14g01028	682	Gene3D	Transferase(Phosphotransferase) domain 1	432	647	-	-
	Trre14g01028	682	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	476	488	IPR008271	GO:0004672\|GO:0006468
	Trre14g01028	682	MobiDBLite	consensus disorder prediction	1	249	-	-
	Trre14g01028	682	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	267	663	IPR047117	-
	Trre14g01028	682	PRINTS	Proline rich extensin signature	25	37	-	-
	Trre14g01028	682	PRINTS	Proline rich extensin signature	40	61	-	-
	Trre14g01028	682	PRINTS	Proline rich extensin signature	64	80	-	-
	Trre14g01028	682	PRINTS	Proline rich extensin signature	3	19	-	-
	Trre14g01028	682	SMART	serkin_6	356	601	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre14g01028	682	CDD	STKc_IRAK	362	631	-	-
	Trre14g01028	682	MobiDBLite	consensus disorder prediction	33	239	-	-
	Trre14g01028	682	ProSiteProfiles	Protein kinase domain profile.	356	631	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre14g01028	682	ProSitePatterns	Protein kinases ATP-binding region signature.	362	384	IPR017441	GO:0005524
	Trre14g01028	682	Gene3D	Phosphorylase Kinase; domain 1	335	431	-	-
	Trre14g01028	682	FunFam	Proline-rich receptor-like protein kinase PERK8	328	431	-	-
	Trre14g01028	682	FunFam	proline-rich receptor-like protein kinase PERK8	432	642	-	-
	Trre14g01028	682	Pfam	Protein kinase domain	357	624	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre14g01028	682	SUPERFAMILY	Protein kinase-like (PK-like)	339	627	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre14g01028	Trre-Chr14	8731332	8734953	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre14g01028	222	678	Trihelix Transcription Factor Family	AT5G38560	58.836	0.0	567

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Trre14g01028		Pkinase	8.1e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre14g01028	-		-	tpra:123889774	845.499