Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01024 ATGTCGTCGTTGATTCAGAGCGAACCGAAGGTTGAGGGCAAACGCGGTCAGGAAGACGTCAGTGGTTCTCTGATAGGGCTCGACGAGAATGAAATCAAACGCCCCAAACCTTCGAGTCACGGTGACGAAGAATCTCTATTGTCCTTGGTTATGCGGCGCCAACGTTACTACAAGGATTTGCCGGAGGACCCAGACAGAACTCTAGTGTCAATTATGTGGCGCAATGCTAACCTCAAGAAGGATTTGTTGCCCAAGGACGCAGACGTTTGTAGATGTGGTCATCCTCGTGGTCATGCTCATGCTCCTGATCATCTCCTTCCTCGGGATCCTCGCTTCGAGTGTATTCCGGGTATCCTTGTACCTCGCTTCCTGTGGCCTTTTTTGGACGAGATGATTGCTAACTCCGATGATAGAACTCTTGTGGCAAGCGGCCTCTCGCGTGAAATAAATGATGACACTTGTTTCCTCGAGCTTTTCAAGCCTTTTGGTGAGGTGATCAGTGCAAACCTTGCTGTTCGTGATCCAGAGCATAACTGTGGTGGGTTATTTGGCTTTGTTACCTTTCTCACCAAGAAAGCTGCTAAGCAGGCTATTCGCACACTCAATGGCGGCTCAGATCACATTCGTAAAGTTATTTGGGCCAAACAAATCAACATGCCTCCTATGGATCCTCGATACCGGTCTATTCCGGGTATCTTTGTACCTCCCTTGCTGTGGCCTTTTGTGGAGGAGATGACTGCTAAGTCCGATGATAAAACTGTTCTAGCAAGCAACCTCACGCTTGAAATAGATGAAGACACTTGTTTACTAGAGCTTTTCAAGCCTTATGGTGAGGTGATCTGTGCCAATCTTGCACCTATTGATCCAGAGCGTAACCGTGGTGCGTTATTTGGCTTTGTTACCTTTGTCACCAAGGAAGGTGCTGAGCAGGCTATTCGCACACTAAATGGCTCTGGCCCTTATGGCTGGGATAAACGCATCCTTAAAGTTAATTGGGCCAAACAGTCAACCTAA 1014 0.4793 MSSLIQSEPKVEGKRGQEDVSGSLIGLDENEIKRPKPSSHGDEESLLSLVMRRQRYYKDLPEDPDRTLVSIMWRNANLKKDLLPKDADVCRCGHPRGHAHAPDHLLPRDPRFECIPGILVPRFLWPFLDEMIANSDDRTLVASGLSREINDDTCFLELFKPFGEVISANLAVRDPEHNCGGLFGFVTFLTKKAAKQAIRTLNGGSDHIRKVIWAKQINMPPMDPRYRSIPGIFVPPLLWPFVEEMTAKSDDKTVLASNLTLEIDEDTCLLELFKPYGEVICANLAPIDPERNRGALFGFVTFVTKEGAEQAIRTLNGSGPYGWDKRILKVNWAKQST 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01024 337 MobiDBLite consensus disorder prediction 29 45 - -
Trre14g01024 337 CDD RRM_SF 140 211 - -
Trre14g01024 337 SMART rrm1_1 139 211 IPR000504 GO:0003723
Trre14g01024 337 SMART rrm1_1 253 331 IPR000504 GO:0003723
Trre14g01024 337 SUPERFAMILY RNA-binding domain, RBD 131 204 IPR035979 GO:0003676
Trre14g01024 337 SUPERFAMILY RNA-binding domain, RBD 242 335 IPR035979 GO:0003676
Trre14g01024 337 MobiDBLite consensus disorder prediction 1 45 - -
Trre14g01024 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 257 318 IPR000504 GO:0003723
Trre14g01024 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 155 203 IPR000504 GO:0003723
Trre14g01024 337 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 248 334 - -
Trre14g01024 337 Gene3D - 242 337 IPR012677 -
Trre14g01024 337 Gene3D - 129 218 IPR012677 -
Trre14g01024 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 335 IPR000504 GO:0003723
Trre14g01024 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01024 Trre-Chr14 8703275 8705130 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01024 233 337 Eukaryotic Initiation Factors Gene Family AT5G06000 36.842 8.28e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01024 K03248 - tpra:123898674 96.2857