Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01022 ATGGAGTTTGATCCAAATTCCATAGAAATTTCACAACCTCGTGCGGGTCCCTCATTATCAATGTCATTAATCGATGCACACGCATCTATGGAAATGATTCCTAAGCTGCTAGATTCTGATCAAAGGCTCGCTCTTGGTGATAAGAATCGACAAACGAGTGACCAGGAAAAGAATGATCAAATTTTGACTCAAAATGCTAATAAAATCAAAGAAAAATGGACTGCGGATGAGGACAGACTTCTTATCCTACTTGTGGATTTGTTGGGGCCTAAAGATTGGTACTATATTGCTATGTTCATAGAAGGCAAGATTGGGAAACAATGCTGGGAGAGATGGCATAATCATCTTAAACCAAATATTAAGAAGGGTCCCTGGAATGAAGAGGAGGACAGAATTCTTATTGAAGCTCATAAAGAAGTAGGGAACAAGTGGACAGAAATTGCAAAGAGATTGCCAGGGCGTCCCGAGAACTCGATCAAGAACCGTTGGAATGCAACTAAGAGGAGTCTGAATCCTAAGATGATGAAAAAGCAAAATAGGAGAAATGATGGATCAAAGGGAAAATTACTTCAAAACTATATTAGGGAAGTCATTAGTCAAGAAGGTGAAAGGGAAATGATGAAAAATAAGAGCAAGATGTGTACTGAAAATGAGGAAGATCCGGCTACTCAAGAGGATGAAGTTGGTGATGACACTGAAATGACAAGTGAATCTAGCACAATGGATTATGAGGTTGGAATCTAG 744 0.3925 MEFDPNSIEISQPRAGPSLSMSLIDAHASMEMIPKLLDSDQRLALGDKNRQTSDQEKNDQILTQNANKIKEKWTADEDRLLILLVDLLGPKDWYYIAMFIEGKIGKQCWERWHNHLKPNIKKGPWNEEEDRILIEAHKEVGNKWTEIAKRLPGRPENSIKNRWNATKRSLNPKMMKKQNRRNDGSKGKLLQNYIREVISQEGEREMMKNKSKMCTENEEDPATQEDEVGDDTEMTSESSTMDYEVGI 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01022 247 Pfam Myb-like DNA-binding domain 70 116 IPR001005 -
Trre14g01022 247 Pfam Myb-like DNA-binding domain 122 164 IPR001005 -
Trre14g01022 247 Coils Coil 190 210 - -
Trre14g01022 247 Gene3D - 69 122 - -
Trre14g01022 247 MobiDBLite consensus disorder prediction 200 247 - -
Trre14g01022 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 117 171 IPR017930 -
Trre14g01022 247 SUPERFAMILY Homeodomain-like 67 163 IPR009057 -
Trre14g01022 247 ProSiteProfiles Myb-like domain profile. 117 167 IPR001005 -
Trre14g01022 247 Gene3D - 124 189 - -
Trre14g01022 247 SMART sant 69 118 IPR001005 -
Trre14g01022 247 SMART sant 121 169 IPR001005 -
Trre14g01022 247 FunFam Transcriptional activator Myb isoform A 69 121 - -
Trre14g01022 247 MobiDBLite consensus disorder prediction 200 219 - -
Trre14g01022 247 CDD SANT 124 167 IPR001005 -
Trre14g01022 247 CDD SANT 72 116 IPR001005 -
Trre14g01022 247 PANTHER MYB PROTEIN-RELATED 70 209 - -
Trre14g01022 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 116 IPR017930 -
Trre14g01022 247 ProSiteProfiles Myb-like domain profile. 65 116 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01022 Trre-Chr14 8679232 8685046 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01022 63 197 MYB Transcription Factor Family AT4G18770 57.037 3.28e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre14g01022 Myb_DNA-binding 1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01022 K09422 - gmx:100805329 181.415