Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01021 ATGGCTAGTGAATTTCCTGAGGTTAAGCCAATCCACTTTTTCAAGATTATAGTCACTCAAACCCTTCATCAAGGAAAGCTTGTTCACATATTTGAAAACAGTGCCTTAGAGATAAATTACCCTTTCCAAGGAAATAAACCTCCAAGTGGTGAAAATTGTAGAGCACCTCAAAAGAGAAAAGCTAATTCCTCCTTTGAATTTCTTCAACAATGTAAGATTGGAAAATCACAAAAGGTAGTTGTGCATCACATTGACAAAAAATGTAAAGGGAAACAAGTGATTACTACTGCTGTTGAAAGAGCAAAATCGTTCAAAACATATAATCCATCTTTTGTTCTTGCCATGGGTGCATCATACGTTGAACACCGTTTTCTCCTAACTATACCATCTAAGTTTGGCAAGACACACTTTGATTTGAAAAAGAAAAGAGGTGATATTTATTTTCAGGTGTTAAATGGAAGAGTTTGGCCCGCAAGATACACTATTAGGAGGAGGTGCTCTACGGAACTAAAATTTGAACTCACAAGTGGATGGAAGAAATTTGCAAAGGACAACAACTTGAAAGTTGGCGATGCTTGCAACTTTGAGCTCATTCTTAGTACTAATATGACTTTTCAAGTTGAAATCTTTAGAGAGAAAGAAAATGGCAACACAAATTGTTCAACATCTCAAAGAAAATGCTCGATCATGGCTAATGAATCTCCTCATATGAAGCCAACCCATTTTTTCAAGATCATATGTGATCAAAACCTTCATGAAGGAAAGCTTATAATGCCAAGAAAATTTGATGCTAAAAGGGTATTTAATGGTCAAAAGAAGAAAGCGAACTTGACATTACAATTTCAACAACCATGTGAAATTGGAAGTAGTAGTTGTGTTAAAGTTGAGAAATTGCAAAAGGTAGCAGCTTTGAATCATATTGACAAAAAGTGTAAAGGAGAGCAATTGGTTATTGCTAAGAAAGTTACTGCCCTTGATAGAGCAATTTCTTTCAAAACTTGTAATCCATCCTTTCATGTTGTCATGTGTCCATCATACTTGGATGGTCCTAGCAATCTGCATATACCAAGTGAGTTTGGCAAAAGACACTTGTTAGATTTAGACAATAAGCAGGGAGATATTCATCTTAGGTTATTAAATGACAAAGTTTGGCAAGCAAAGTACCGAATTAGGATAGCCAATGGAGTACAAAGATATGAAATGTACTCAAGTGGATGGAAGGAATTTGCAAAGGACAACAACTTGAAAACAATTGAATTTGTTCAACATCTCAAGAATCATTAA 1284 0.352 MASEFPEVKPIHFFKIIVTQTLHQGKLVHIFENSALEINYPFQGNKPPSGENCRAPQKRKANSSFEFLQQCKIGKSQKVVVHHIDKKCKGKQVITTAVERAKSFKTYNPSFVLAMGASYVEHRFLLTIPSKFGKTHFDLKKKRGDIYFQVLNGRVWPARYTIRRRCSTELKFELTSGWKKFAKDNNLKVGDACNFELILSTNMTFQVEIFREKENGNTNCSTSQRKCSIMANESPHMKPTHFFKIICDQNLHEGKLIMPRKFDAKRVFNGQKKKANLTLQFQQPCEIGSSSCVKVEKLQKVAALNHIDKKCKGEQLVIAKKVTALDRAISFKTCNPSFHVVMCPSYLDGPSNLHIPSEFGKRHLLDLDNKQGDIHLRLLNDKVWQAKYRIRIANGVQRYEMYSSGWKEFAKDNNLKTIEFVQHLKNH 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01021 427 CDD B3_DNA 336 417 IPR003340 GO:0003677
Trre14g01021 427 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Trre14g01021 427 Pfam B3 DNA binding domain 338 421 IPR003340 GO:0003677
Trre14g01021 427 SUPERFAMILY DNA-binding pseudobarrel domain 107 212 IPR015300 -
Trre14g01021 427 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Trre14g01021 427 CDD B3_DNA 109 211 IPR003340 GO:0003677
Trre14g01021 427 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 79 214 IPR044837 -
Trre14g01021 427 ProSiteProfiles B3 DNA-binding domain profile. 338 427 IPR003340 GO:0003677
Trre14g01021 427 SUPERFAMILY DNA-binding pseudobarrel domain 331 417 IPR015300 -
Trre14g01021 427 SMART B3_2 338 427 IPR003340 GO:0003677
Trre14g01021 427 SMART B3_2 111 213 IPR003340 GO:0003677
Trre14g01021 427 Gene3D - 91 215 IPR015300 -
Trre14g01021 427 Gene3D - 317 421 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01021 Trre-Chr14 8665145 8671083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01021 324 415 REM Transcription Factor Family AT1G49480 31.522 1.27e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre14g01021 B3 2.5e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01021 - - mtr:11434552 275.404