Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01020 ATGGCTGGTGTTGGCAGCAGAACTCGCAGCAAGAATGTTCCTTTGTTTGGATGTCTTTCTCTCGAAAAGAAGAGAAAACGGGTCAGTGATTCGTTTGTTTATTTGGGTTCTGGTTCTTGCAAAAATATTTGCTCAGATGATGTTAAAAATGAAAACTTTAGCAATGTAAAGTGTAGTTTGGAACGCGAAAACTCTGAAGAAGATTCTGATGATTATAGCAGTGAAGAAAATGAGACTAGTGAGGAAAACTCTGAAGAAGATTCTGATGAGAGTAGTGAAGAAAATGATACTAGTGATGAAGATTTTGAAGTTGATGAGGTGAATGAAATTTCTGAGAGTGATGGAGAAGATACTTCATCATCTAAATCTCCTTATGTTGTGTATTACAATAAAAAATATTACGACAAAAAATGTGGAGGAATTTCTACCAAACCATTGGAGGAAGAGATGAAAGGTTCTTCTTCAAAGGTTAATGAAGCTTCTCAGAAACAGGATAAGAAGAGTGTTGATTCTTCTTCAAAGGCTTTTGTTGATGAAAATCAAAAGGATATTAAGAAGAAATCTAGTTTAAGAAGACAACAACATAGTGTACCAATGGTAGAAGATATAGAAGATTCAATCAAAGACAAAGACAATTGCAAAGCTAATGCTAATGCTAATGCTAATGATGACACTGCGAGTCTCGGTGTTTCAGGTGAAGGAGAATCACCAAGACTCGCGGTGTCATTACAAAAAAAAAAGTTAGCTAAGCACAAAACTGTGGAGAACAAGGGAAAGGGTCCGAGAGGTGGAAATAGCATTGGTAAGGGTAAGAAAAAGGAAACCTTGGATGACAAAAGTGGTCAAAGCAAGCTATTTTTAAAGAAGGAGCTGCACAAACATCTTGAGGAATGGGAATGCTATTTTGGAACCAAAAACACTAAGAAGAATGGTGATTCGGTTGTGTTGGAGGTGAAGGATGATGATGGTGTTAACCGGCAAGATATGCGTCCACAAGTTTGTAAGGAGACACCTCCATTATATTGGAGTCTTGGTAAAAAAGTTGAAAAAGCCGCGCCAAAATCGGAGGAAGAAGAAATGATATGTGAGTTGTGGGATGAAATGGATAGAGTGAGTAGAGAAGATCAAGCTGAATCAATGATTGGAAATATAGGGACCAATGAAGCTTCTAACAAAAACATGGAAGATCCATTTTCCCTTTGTAACCATGACACTCGTCTCGATGAAGAGATCGGAGTATATTGCAGGTTGTGTGGTTTGGTTGTCACTGAGATCAGATATATCTCAGAGCCGGTGGTGGATAGATATCCGAACGAAGGTTCAGGACGAAGGGCGTCAATTGGTGGAGACGATGGTTCACTCTTTGATCGGTCTCACTTCAATGTTTCTCATGATGACTCGAATGCAAATTTTTATCATAATGAAGGCACAGTTTGGGACAAAATTCCTGATGTGAAGCAAACCTTATACCCTCACCAACAAGAAGGTTTTGAGTTCATATGGAAAAACTTGGCAGGAAGCATCGAGCTTCAAAAGTTAAAGAATGCTGATCCTCGCAGCGAAGGTGGTTGCATTATTTCTCATGCTCCTGGAACCGGAAAGACAAGGCTGACAATAGTGTTTCTGAAGGCATATGTGCAAGTGTTTCCAAAATGCATGCCGATTATTGTCGCTCCTTCTAGTATACTACTAACTTGGGAAGAGGAATTCAAAAAGTGGGACATTGGAGTTCCATTTCACAATTTAAGCAATCGGGAGTTATCTGGTAAAGAGCATGCTGATGCGGTTAACACATTCGATATGTCTAATAAACATCATAGTATTGAAAAAACTCGAATGGCAAAACTGATTTCGTGGTTCAAAGAAACAAGCATTCTTGGAATCAGCTACCATTTGTATCAAAGGAAATGCAACGATACAAAAAAGAAAAAGCATGAAAGTGTGAAGGAGAGAAAAGGAAAATTTGATATGCGAAAAATTCTACTTAAAGCTCCTGGTTTGTTAGTTCTGGATGAAGGACACACACCAAGAAATCAAAGAAGTCATATTTGGAAGGTGTTGTCAAAGATTCAAACGCAGAAGCGAATCATCCTTTCTGGAACTCCATTCCAGAACAATTTCTGGGAGCTTTACAGCACTTTGAGCTTAGTCAAGCCTTCTTTTCCTGACACGATACCGCCTGAGCTAAGAAGATTTTGCCATGAGCGGGGGTGTAAATCATCTAAAGAATGGAGTTGGGAACCTGTTTCTTGCAACACAAGAAACACTTCTGATGATAAGATCAATAGGTTGAAATTGCTAATGGATCCCTTTGTTCATGTTCACAAAGGTGCGATCCTTGAAAATAAGCTTCCCGGGTTAAGGGACTGTTTGGTGACTTTGAAGGCCGGTAGTTTGCAGAATGAAATCCTGAAGAGAATTAAACGTTCTCAGAACAAAGTATTTAACTTTGAGTATAAGATTGCATTGACATCGGTCCATCCATCTCTTTTACTTGAATGTGATCTTACAGAAGAAGAAGAATCTATACTCGACAAGGATCAGCTGGAAAAGATAAGACTGAACCCGTATGAAGGTGTCAAAACAAAATTTTTGTGCGAGTTTGTTCGGCTGTGTGATTCTCTTAATGAGAAAGTTCTTGTGTTCAGCCAATTCCACGCTCCTTTACGATTAATTAAAGACCAATTAAACTCGGTTTTTAACTGGTCTGACGGAGAAGTGCTGTTCATGTCTAGCGAAGATCCTGCAAAGGTTAAGCAGTCCATAATACATAGCTTCAATGATGAAAATAGTAAAGCAAAGATTCTACTTGCAGCTACAAAAGCTTGTTCCGAGGGAATTAGCTTGGTTGGAGCTTCAAGGGTTGTGTTTCTTGATGTTGTATGGAATCCTTCGGTCAAAAGACAGGCTATCAGCCGAGCCTATAGGATTGGACAGAAGAAGGTGGTAAACATATACCAACTTCTCGCTGAAGGGACTACCGAGGAAGAAAAATATGGTAAACAGGCTGAAAAGGACCGGTTATCTGAGCTCCTTTTTTCAGCTAAAAATGTTACTGATAATGATGATGTGCCCAAGAAACGTGCTGTGAACTTTGAAGATAGTGTTCTTGATAAGATGAATCGGCATGAAAAGCTCATAGACATGTTTGTTAAGTGCGTAGTACTGAGGAAGGAGCGAGATTTGGTCTGA 3192 0.3916 MAGVGSRTRSKNVPLFGCLSLEKKRKRVSDSFVYLGSGSCKNICSDDVKNENFSNVKCSLERENSEEDSDDYSSEENETSEENSEEDSDESSEENDTSDEDFEVDEVNEISESDGEDTSSSKSPYVVYYNKKYYDKKCGGISTKPLEEEMKGSSSKVNEASQKQDKKSVDSSSKAFVDENQKDIKKKSSLRRQQHSVPMVEDIEDSIKDKDNCKANANANANDDTASLGVSGEGESPRLAVSLQKKKLAKHKTVENKGKGPRGGNSIGKGKKKETLDDKSGQSKLFLKKELHKHLEEWECYFGTKNTKKNGDSVVLEVKDDDGVNRQDMRPQVCKETPPLYWSLGKKVEKAAPKSEEEEMICELWDEMDRVSREDQAESMIGNIGTNEASNKNMEDPFSLCNHDTRLDEEIGVYCRLCGLVVTEIRYISEPVVDRYPNEGSGRRASIGGDDGSLFDRSHFNVSHDDSNANFYHNEGTVWDKIPDVKQTLYPHQQEGFEFIWKNLAGSIELQKLKNADPRSEGGCIISHAPGTGKTRLTIVFLKAYVQVFPKCMPIIVAPSSILLTWEEEFKKWDIGVPFHNLSNRELSGKEHADAVNTFDMSNKHHSIEKTRMAKLISWFKETSILGISYHLYQRKCNDTKKKKHESVKERKGKFDMRKILLKAPGLLVLDEGHTPRNQRSHIWKVLSKIQTQKRIILSGTPFQNNFWELYSTLSLVKPSFPDTIPPELRRFCHERGCKSSKEWSWEPVSCNTRNTSDDKINRLKLLMDPFVHVHKGAILENKLPGLRDCLVTLKAGSLQNEILKRIKRSQNKVFNFEYKIALTSVHPSLLLECDLTEEEESILDKDQLEKIRLNPYEGVKTKFLCEFVRLCDSLNEKVLVFSQFHAPLRLIKDQLNSVFNWSDGEVLFMSSEDPAKVKQSIIHSFNDENSKAKILLAATKACSEGISLVGASRVVFLDVVWNPSVKRQAISRAYRIGQKKVVNIYQLLAEGTTEEEKYGKQAEKDRLSELLFSAKNVTDNDDVPKKRAVNFEDSVLDKMNRHEKLIDMFVKCVVLRKERDLV 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01020 1063 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 867 1024 IPR001650 -
Trre14g01020 1063 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 771 IPR027417 -
Trre14g01020 1063 MobiDBLite consensus disorder prediction 65 113 - -
Trre14g01020 1063 MobiDBLite consensus disorder prediction 137 187 - -
Trre14g01020 1063 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 665 1017 IPR027417 -
Trre14g01020 1063 SMART helicmild6 894 978 IPR001650 -
Trre14g01020 1063 MobiDBLite consensus disorder prediction 213 229 - -
Trre14g01020 1063 SMART ultradead3 485 732 IPR014001 -
Trre14g01020 1063 CDD SF2_C_SNF 861 989 - -
Trre14g01020 1063 Pfam SNF2-related domain 500 808 IPR000330 GO:0005524|GO:0140658
Trre14g01020 1063 Pfam Helicase conserved C-terminal domain 872 978 IPR001650 -
Trre14g01020 1063 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 515 720 IPR014001 -
Trre14g01020 1063 Gene3D - 461 755 IPR038718 -
Trre14g01020 1063 Gene3D - 787 1053 IPR027417 -
Trre14g01020 1063 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 38 1061 IPR044567 GO:0080188
Trre14g01020 1063 MobiDBLite consensus disorder prediction 197 212 - -
Trre14g01020 1063 MobiDBLite consensus disorder prediction 55 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01020 Trre-Chr14 8649444 8653471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01020 876 1036 RAD5 or RAD16-like Gene Family AT5G05130 34.568 2.51e-16 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre14g01020 SNF2_N 2.5e-23 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01020 K10875 - gmx:100812737 827.009