Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01003 ATGCAACTTCATAATCTTTGCATTGTTTTACCACAAAATTCAGGTGAACTAATGAACCAACAACCTCAAAAAAGTTTCAAACAAAAATCTTTTAAAAAATCTTCAAAGAAACAAAAATTTAAGTCCAAAACTCCTTCAAGGACTTGTGGTGGAGGACAACAAGTTCTTGATTTGCTTCATGATTCATTAAGCAAGTTATGTAGCTCAAAATGGTTGGTGGGTGCAAAAAGAATTTGTAAAAATGGAGGGGTGCAAAAAGAAAAAAAGAAAAAATCCTCAACTATGTTTCATGACATGGATGGTGTACAATTTGGTGTGAAGATTGGAAGAGACAATCCAAGAATTTTCAGCTATGCAGAACTTTTCATAGGTTCTAATGGTTTCAATGAAGAACAAGTTCTAGGAAGTGGAGGTTTTGGAAAAGTTTACAAAGCTCTTTTGCCAAGTGATGGAACTTTAGTAGCTGTGAAATGTTGTTTATCAGAAAAAGGTAAACAATTTGACAAAAGTTTCTTAGCCGAATTATCGGCTGTAGCCGATCTTCGACATAAGAATCTTGTTAGGTTAAGAGGTTGGTGTGTACATGAAGATCAATTACATCTTGTTTATGATTACATGCCGAATCGAAGCCTTGACCGTGTACTCTTCCGAAGGGCGCCGGAGAATTTGAAAGGTGAGCAGCCTCTTGGTTGGAGACAAAGAGAAAAAATTGTTAAAGGTTTGGCTGCTGCATTGTATTATTTACATGAACAATTAGAGACTCAAATTATTCATAGAGATGTTAAAACAAGTAATGTTATGCTTGATTCTCATTATAATGCTAAGTTAGGTGATTTTGGTATGGCAAGGTGGCTAGAACATGAACTTGAGTATGAGTTTAAGTTCAAATATAATTCTAGCAATAAGAAAACTTCAAGTAGAATTGATCATTTCAAATTAGGAGAAACATCAAGAATTGGTGGAACAATTGGTTATCTTCCACCAGAAAGCTTACAAAGACTAAGCAATGGTACATCAAAATGTGATGTATTTAGCTTTGGTATTGTTGTGCTTGAAATTGTATCAGGAAGAAGAGCAATAGATTTAGCATATTCTGATGATAAAATCATTTTGCTTGATTGGATTAGAAGGCTTTGTGATGAAGGAAAGGTTATAGAAGCAGCTGATATAAGGTTTCAAAAAGATGGATCATATAATTTTTCTGAGATGAAGCATTTCATTCATATAGGTCTTCTTTGTACACTTCATGATCCAAATTTAAGGCCTAATATGAAATGGATTGTGGAAGCACTTTCTGATTTAAGTTTTAAACTTCCTTCACTTCCTTCATTTCTATCACATCCTCTATATATCTCTTTGTCTTCACCAAGTGAAACTACTAGTCCTAGTAGTACTAGTGGCACAATTTCAGCCTCGGAAAATGTTAGCTTGATCACAAACTATAGTTCATCAAACTATGTTACAGCTGCAGGTGAAACAGTTTATGTAACTGCTGACAACAAAAATAGTGGAATCAATTCTTCTAATAGGCCTCATCATCATCACAACAGGCAACGGTTTCCGGTGGTTGAAACTCCGAGAGAAATTTCATACAAAGAGATTGTTTGTGCTACAAATAACTTCTCAGAGTCAAGAAGGGTAGCTGAACTTGACTTTGGAACTGCTTATCATGGAGTTCTTGATGACAATTGCCATGTTTTGGTGAAAAGATTGGGAATGAAGACGTGTCCTGCATTGCGCGATAGATTCTCGAATGAACTCAGAAATCTAGGAAAGCTTCGGCATAGGAATTTGGTTCAGCTTCGCGGATGGTGTACCGAACAAGGGGAGATGCTCGTGGTTTATGATTACTCGGCTAGTAGAATTCTCAGTCAACAGCTTCTTCAAATTCATAACAAAGGTACGAATGGATATCGATGTTCGGTACTCGAATGGCATCATAGGTACACCATAGTGAAATCACTTGCTTCTGCTGTTCTTTATCTACATGAAGAATGGGATGAACAAGTGATTCACAGAAACATTACCTCATCAGCTGTTATTCTTGAACAAGATATGAATCCAAGACTTAGTAGTTTTGCTCTAGCTGAATTCTTGTCAAGAAATGAGCATGGCCATCATGTAGCAAATGATACTAACAAATCAGTTCGAGGGATTTTCGGTTACATGTCACCGGAATACGTTGAAACCGGCGAAGCAACCTCGGCTGCTGATGTTTATAGTTTCGGCGTGGTGGTACTTGAAGTTGTTAGTGGACAAATGGCTGTGGATTTTAGGTACCAAGAAGTTCTTCTGGTGAAAAAAGTTCATGAGTTTGTGGTGAGAAAAAGACCATTGAAGGAATTAGCAGATATAAGACTAAATGGAGAGTATAATGAGGAAGAATTGATGAGGTTGTTAAGATTAGGAATTGCATGCACTAGTGGTGATCCTAAGTTGAGACCAAGTATGAGACAAATTGTGAGCATTCTTGATGGAAATGATAAATTACTACTTAACTTGATAAAGAAGGAAAGTAGGGAAGAATGGAGAGAAAGAAATTCTAGTTCTTTGTCTATGATTAGGAGAATTCAAGCTTTAGGAATACAGTAA 2592 0.3634 MQLHNLCIVLPQNSGELMNQQPQKSFKQKSFKKSSKKQKFKSKTPSRTCGGGQQVLDLLHDSLSKLCSSKWLVGAKRICKNGGVQKEKKKKSSTMFHDMDGVQFGVKIGRDNPRIFSYAELFIGSNGFNEEQVLGSGGFGKVYKALLPSDGTLVAVKCCLSEKGKQFDKSFLAELSAVADLRHKNLVRLRGWCVHEDQLHLVYDYMPNRSLDRVLFRRAPENLKGEQPLGWRQREKIVKGLAAALYYLHEQLETQIIHRDVKTSNVMLDSHYNAKLGDFGMARWLEHELEYEFKFKYNSSNKKTSSRIDHFKLGETSRIGGTIGYLPPESLQRLSNGTSKCDVFSFGIVVLEIVSGRRAIDLAYSDDKIILLDWIRRLCDEGKVIEAADIRFQKDGSYNFSEMKHFIHIGLLCTLHDPNLRPNMKWIVEALSDLSFKLPSLPSFLSHPLYISLSSPSETTSPSSTSGTISASENVSLITNYSSSNYVTAAGETVYVTADNKNSGINSSNRPHHHHNRQRFPVVETPREISYKEIVCATNNFSESRRVAELDFGTAYHGVLDDNCHVLVKRLGMKTCPALRDRFSNELRNLGKLRHRNLVQLRGWCTEQGEMLVVYDYSASRILSQQLLQIHNKGTNGYRCSVLEWHHRYTIVKSLASAVLYLHEEWDEQVIHRNITSSAVILEQDMNPRLSSFALAEFLSRNEHGHHVANDTNKSVRGIFGYMSPEYVETGEATSAADVYSFGVVVLEVVSGQMAVDFRYQEVLLVKKVHEFVVRKRPLKELADIRLNGEYNEEELMRLLRLGIACTSGDPKLRPSMRQIVSILDGNDKLLLNLIKKESREEWRERNSSSLSMIRRIQALGIQ 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01003 863 CDD STKc_IRAK 552 826 - -
Trre14g01003 863 FunFam Receptor like protein kinase S.2 499 617 - -
Trre14g01003 863 FunFam Receptor like protein kinase S.2 619 848 - -
Trre14g01003 863 FunFam Receptor like protein kinase S.2 206 437 - -
Trre14g01003 863 Gene3D Transferase(Phosphotransferase) domain 1 625 844 - -
Trre14g01003 863 Pfam Protein kinase domain 128 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g01003 863 Pfam Protein tyrosine and serine/threonine kinase 546 824 IPR001245 GO:0004672|GO:0006468
Trre14g01003 863 ProSiteProfiles Protein kinase domain profile. 541 831 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g01003 863 ProSitePatterns Protein kinases ATP-binding region signature. 134 157 IPR017441 GO:0005524
Trre14g01003 863 PANTHER - 73 433 - -
Trre14g01003 863 Gene3D Transferase(Phosphotransferase) domain 1 206 437 - -
Trre14g01003 863 ProSiteProfiles Protein kinase domain profile. 128 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g01003 863 SMART serkin_6 128 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g01003 863 Gene3D Phosphorylase Kinase; domain 1 102 205 - -
Trre14g01003 863 SUPERFAMILY Protein kinase-like (PK-like) 112 460 IPR011009 -
Trre14g01003 863 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Trre14g01003 863 MobiDBLite consensus disorder prediction 18 48 - -
Trre14g01003 863 Gene3D Phosphorylase Kinase; domain 1 501 617 - -
Trre14g01003 863 MobiDBLite consensus disorder prediction 29 43 - -
Trre14g01003 863 SUPERFAMILY Protein kinase-like (PK-like) 517 824 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01003 Trre-Chr14 8496979 8499570 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01003 527 825 Receptor kinase-like Gene Family AT5G55830 36.424 1.64e-51 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre14g01003 Pkinase 1.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01003 - - gmx:100796108 1219.53