Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00999 ATGGGTTTAAAATCTGTTTCTGGGTCTAAAGAAAGGAAGGTAAATGAAGACGTTGAAGGGTTGGAGCAATGTGATGAGAAGAAGCTTGAGGGTGATATTGATGTTATAAAGGAAATGAAACGTGATGAAAGAGGTGGGATTGATGATAAAGTTGAAAACTTTGTTGATGGAAAGTGTGATTTGGAACCTGAAAATCCAATTATAATAAGTGTGGGTGGTGTTTCTAGCCGAACTCGTAGCAAAAAAGTACCATTGTTTGATTGTCTTTCACTTGATGGTTTATCTTCTAAGAGGAGAAAGGGTGATGAAGGTGGACTGGTTCTGGGATCTGTTTCTGGGTCTGGAAAAATGAGGGTAAAGGGAGAAGTTTTAGTGGTTCCTGAGAATGATATGGTTATTTCCATCCATGATGATGTTGATGAAGAAGGGTTGGTTCAATGTGGTGAGAAATTGTTTGAGGGTGGTGTTGATGTTAAAAAGGATATGAAAAGTGGTGAAAATGGAGGAAGTGGTGATTTTGCTGATAAAGATGAAAACTTTGTTAATGAAAAGTTTTCAGATAAATCTAATGAAAGTGATGATGATGATGTGGAAGGGTCGGATCAATGTGATGAGAAGATGCTTGAGGGCAGCGTTGATGTTGTAAAGGAAGTTATAATTGATGAAAGTGGAGGAATTTTTGAGATTGGTGATAAAGATGGAAACTTTGTTGATGATGGTGGTTTAGAACCTGAAAACCCAATTACAGTAAGTGAGGCTGGTGTTTCTAGCCGAACTCGAAGCAAAAATGTTCCTTTGTTCGGTTTTCTTTCACTTGATGGTTTATCTTCAAAGAGGAGAAGGAATGATAAAGATGAAATTGCTTTGGTCTCTGTTTCTGGGTCTACAAAAATGAGGGTAAAGGGAGAAGTTTTGGTGGTTCCTGAGAATGATAAGGTTATTTCCATCCATGATGATGATGTTGATGATGAAAATGAAGAAGGGTTGCAGCAATGTGGTAAGATGTTTGAGGGTGATGTTGATGTTATAAAGGAAGTGAAATGTGATGAAAATGGAGGAAGTGGTGAAATTACGGATAAAGATGAAAACTTTGTTGATGATAAGTTTTCAAATGAATCTGGTGAAAGTGATGATGAAGAATTCTCTGTTGATGTTGATGTTGATGATGATGATGATGATGATGATGATTACGATGATGAAGAACTCTCTGTTGATGATGATGATGAAGATGAGAGTGAGGAAAATGAGACCAGTGATGAAGATTTTATAGTTGACGAGGATGATGATGGAAGTTCTCCTTATGTTAATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGGTAAGGATGATGATGGTGATGATGATGTGGAGGAGGAGGAGAAGAAGGGCTGCAGTGTTGATGATGGTAAGGAGGAGGGTGTGGAAAAGTTGTGGCAAGAATGTGCCATGATGGAAAAGCTGTTGAAAGATAAAAATAGTGAAATTTCTGAGAAGAATAATGAGGTGGTAAATATTGAGAGTAGTCCTTCTTCTGTTAAGAACGACGATTTGGAACATGCAAATCATTCTAGTGTAACAACCTCTGTTCCCTTTGAGAAAAAGGGTTATTTTGAACCAATGAAGGGTTCTTCTTCCAACCTGAATAAAGTATCCGAGAAAAGCAAATCAAAGAGTGCAGGAATAATAAACATGCAAAATGTCAGTGGTGAAGATGATGTTCAAGTTATTGGTTCTTCTAAGCTTCACAAGGGTGAGACAAATAATGCCAAAGCAAAAGCAAAAGCCAAAGATTATGTTAAAGCTAATGACATTGTGAATGTTGATGATTATGATGAAGGAAAACAACATGGCGAAGGTTTAGCTGTTCGAGGAGTTTCTTTGTTTCAAGCAAAACAAGAAAATATGTGGTTTGCAGATACACAAAAAATGCCGGAGAACAAAGGAAGGGATTATAAAGGTAGAGTTAACTTCTGGAATGGTGAGAAGAAGGCAACCGTGGAAAACAATGGTTTAAATCAAAGGGTAAACAGCACACTGTTTATGCGGAAGGAGTTGCGTTTAGCTAAACTCCTTGCTGACTGCTATTGGGGTGACAAGAATGATACCATGAAGAATGATTCAACTCTATTGGAGATCAAGGATATCGCTGTTGATCAGAGAGATACACGGCCACCACCGGTTTGTGTAGAGACACCATCATTGATATGGAGCCTAAAAAAGGTTGAAAAAGTGGAAAAGACTAAAGAGGAGGAGGAGCAGGAAATGTTATGGGATGAAGTGGATACATCCCTTAGAGAATTAGAAGCTGAATCCATGATTGGAAGTTTAGGGACAAATGAAGTTAAGCAAGAAAACAAGGGAAATCGCTGTGAACATGATACTCGTCTCGACGACGAGATTGGTGTATATTGCAGATGGTGTGGTGTGGTTTTCACTGAGATCAAATATATCTCACCACTGGTGGTGGATCGATTTCCCTGTGAAGGTTCTGGAAAAAGAACTTCATTTGATGATTCAGTTAACACGTCACTCTTTGATGGATCTCAATTCAATGTTTCCGATGAAGAATCAGTGCCGAATTTCTCTTATAATGAAGGCACAGTTTGGGACCTAATTCCTGGTGTGAAACAAACTTTATATCCTCACCAACAAGAAGGCTTTGAGTTCATTTGGAAAAACCTGGCAGGAAACATTCATCTGCACAAGTTGAAGAACGCCAATCCTCGCAGAGAGGGTGGCTGCATTATCTCGCATGCTCCTGGAACTGGAAAGACAAGGTTGACAATAATGTTTCTCATGGCATATATGAAAGTGTTCCCGAAATGCTTTCCGGTTATTGTTGCTCCTGCGGGTTTGTTACTTACTTGGGAAGATGAGTTCAAAAAATGGGACATTGGAGTTCCATTTCACAATCTAAACAGTTCTGAGTTATCTGGGAAAGAGCACGATGATGCTGTTAATTGGTCTAATACACGGCAAAGTAAGGAAGAGATACGGATGGTAAAACTGATTTCATGGTTCAAAGAAAAGAGCATTCTGGGAATAAGTTACACTTTGTACAAGAACCTAGCCGGCGGAGAATTCAAAGATAAGAAAAAAAAGAAAAAACAACATGCTGAAAAAATGAAAAAGGAAAAACATGCAGATGTGGAGAAGAGAGAAGAAAATGATGTTATGCGAAAGGTTCTACTCGAAGTTCCTCGTTTGTTAATTCTAGATGAAGGGCATACACCGAGAAATCGAAGAAGTAATATTTGGAAGGTGTTATCAGAAGTTCAAGCGCGTAAACGAATTATTCTTTCAGGAACTCCTTTTCAAAATAACTTGTTGGAACTTTACAACACATTTAGCTTAGTGAAGCCTTCTTTTCCTAACACGATACCTCATGAGCTGAAAAAATTTTGCGAACGCAAAAGTGCATCGAAAGAATCGAAAGAATGGAGTTGGGAAGTGGATTCTGGCAATAGCACACCAATGAGCAATCCTTCTGATGTTAAGATCAAGCAGTTGAAAATGCTTATGGATCCGTTTGTTCATGTGCATAAAGGAGCAATCCTTCAAAAGAAGCTTCCCGGGTTAAGAGATTGTGTGCTGATTTTGAAGCCGGACAGTTTCCAGAAGCAAATTATCGAGAGCATTCAAAGTGATCAGAATATATTGATCTTTGAACGTAAGCAGACAGTGGCGTCTGTCCATCCATCTCTTTTCCTCCAATGCAAACTCTTGGAGGAAGAAGAATCTGTTGTTGACAAGGATCGGCTAGAAAAGCAATGGTTAAATCTATATGGCGGTGTCAAAACAAAGTTTTTGTTGGAGTTTGTTAAACTTTGTGATGCTTATAATGAGAAAGTTCTAGTCTTCAGTCAATTCCTTGATACTTTAAGCTTAATTGAAGACCAATTAAACTCGGTTTTTAAATGGACCCAGGGAAAGGAAATTCTGTACTTGGATGGAAATGTTGATCCAAACGAAAAGCAGTCCCGAATCCATAGCTTCAATGATGCAAGTTCCCAAGCAAAGATTATGCTTGCTTCAACGAGAGCTTGTTCCGAGGGAATCAGCTTAGTTGGTGCTTCAAGGGTTGTGCTACTCGACGTTGTATGGAATCCATCTGTAGAACGACAGGCTATCAGCAGAGCCTATCGGATCGGACAGAAGAGGGTTGTGTACACTTACCATCTTCTCACTCAAGGGACTGCTGAATATGCAAAATATTGTAAACAGGCCCAGAAGGACCGGTTATCTGAACTCGTGTTTACAGCCAAAAATGCAGATAATGATGATGAATCGAAGAGCTGCACTGTGAACATTGAAGATAGAATTCTCGATCAAATGATGCGGCACGAAAAGCTCAAAGACATGTTTGTTAAGTGTGTGGTACAGCCGAAGGATCAAGATTTGGTCGATAGTTTCGGCTATTGA 4449 0.3898 MGLKSVSGSKERKVNEDVEGLEQCDEKKLEGDIDVIKEMKRDERGGIDDKVENFVDGKCDLEPENPIIISVGGVSSRTRSKKVPLFDCLSLDGLSSKRRKGDEGGLVLGSVSGSGKMRVKGEVLVVPENDMVISIHDDVDEEGLVQCGEKLFEGGVDVKKDMKSGENGGSGDFADKDENFVNEKFSDKSNESDDDDVEGSDQCDEKMLEGSVDVVKEVIIDESGGIFEIGDKDGNFVDDGGLEPENPITVSEAGVSSRTRSKNVPLFGFLSLDGLSSKRRRNDKDEIALVSVSGSTKMRVKGEVLVVPENDKVISIHDDDVDDENEEGLQQCGKMFEGDVDVIKEVKCDENGGSGEITDKDENFVDDKFSNESGESDDEEFSVDVDVDDDDDDDDDYDDEELSVDDDDEDESEENETSDEDFIVDEDDDGSSPYVNDDDDDDDDDDDDDDDDDDDGKDDDGDDDVEEEEKKGCSVDDGKEEGVEKLWQECAMMEKLLKDKNSEISEKNNEVVNIESSPSSVKNDDLEHANHSSVTTSVPFEKKGYFEPMKGSSSNLNKVSEKSKSKSAGIINMQNVSGEDDVQVIGSSKLHKGETNNAKAKAKAKDYVKANDIVNVDDYDEGKQHGEGLAVRGVSLFQAKQENMWFADTQKMPENKGRDYKGRVNFWNGEKKATVENNGLNQRVNSTLFMRKELRLAKLLADCYWGDKNDTMKNDSTLLEIKDIAVDQRDTRPPPVCVETPSLIWSLKKVEKVEKTKEEEEQEMLWDEVDTSLRELEAESMIGSLGTNEVKQENKGNRCEHDTRLDDEIGVYCRWCGVVFTEIKYISPLVVDRFPCEGSGKRTSFDDSVNTSLFDGSQFNVSDEESVPNFSYNEGTVWDLIPGVKQTLYPHQQEGFEFIWKNLAGNIHLHKLKNANPRREGGCIISHAPGTGKTRLTIMFLMAYMKVFPKCFPVIVAPAGLLLTWEDEFKKWDIGVPFHNLNSSELSGKEHDDAVNWSNTRQSKEEIRMVKLISWFKEKSILGISYTLYKNLAGGEFKDKKKKKKQHAEKMKKEKHADVEKREENDVMRKVLLEVPRLLILDEGHTPRNRRSNIWKVLSEVQARKRIILSGTPFQNNLLELYNTFSLVKPSFPNTIPHELKKFCERKSASKESKEWSWEVDSGNSTPMSNPSDVKIKQLKMLMDPFVHVHKGAILQKKLPGLRDCVLILKPDSFQKQIIESIQSDQNILIFERKQTVASVHPSLFLQCKLLEEEESVVDKDRLEKQWLNLYGGVKTKFLLEFVKLCDAYNEKVLVFSQFLDTLSLIEDQLNSVFKWTQGKEILYLDGNVDPNEKQSRIHSFNDASSQAKIMLASTRACSEGISLVGASRVVLLDVVWNPSVERQAISRAYRIGQKRVVYTYHLLTQGTAEYAKYCKQAQKDRLSELVFTAKNADNDDESKSCTVNIEDRILDQMMRHEKLKDMFVKCVVQPKDQDLVDSFGY 1482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00999 1482 MobiDBLite consensus disorder prediction 1040 1062 - -
Trre14g00999 1482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1077 1438 IPR027417 -
Trre14g00999 1482 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1278 1434 IPR001650 -
Trre14g00999 1482 MobiDBLite consensus disorder prediction 372 470 - -
Trre14g00999 1482 Coils Coil 490 517 - -
Trre14g00999 1482 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 914 1131 IPR014001 -
Trre14g00999 1482 MobiDBLite consensus disorder prediction 508 535 - -
Trre14g00999 1482 MobiDBLite consensus disorder prediction 347 481 - -
Trre14g00999 1482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 876 1145 IPR027417 -
Trre14g00999 1482 Gene3D - 860 1169 IPR038718 -
Trre14g00999 1482 MobiDBLite consensus disorder prediction 159 191 - -
Trre14g00999 1482 Gene3D - 1196 1477 IPR027417 -
Trre14g00999 1482 SMART helicmild6 1304 1393 IPR001650 -
Trre14g00999 1482 MobiDBLite consensus disorder prediction 1 21 - -
Trre14g00999 1482 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 328 1475 IPR044567 GO:0080188
Trre14g00999 1482 Pfam Helicase conserved C-terminal domain 1286 1393 IPR001650 -
Trre14g00999 1482 MobiDBLite consensus disorder prediction 159 204 - -
Trre14g00999 1482 CDD SF2_C_SNF 1275 1404 - -
Trre14g00999 1482 Pfam SNF2-related domain 906 1236 IPR000330 GO:0005524|GO:0140658
Trre14g00999 1482 SMART ultradead3 884 1139 IPR014001 -
Trre14g00999 1482 MobiDBLite consensus disorder prediction 347 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00999 Trre-Chr14 8448714 8454024 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00999 1291 1423 RAD5 or RAD16-like Gene Family AT5G43530 38.346 2.54e-17 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre14g00999 SNF2_N 1.5e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00999 K10875 - gmx:100806733 873.233