Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00998 ATGGCTGCTGTTTCTAGCGGAACTCGTAGCAAGATGGCTGGTGTTTCTAGCCGAACTCGCAGCAAAAATATTCCATTGTTCGGTTGTCTATCACTTAATCGTTCATCGAAACGGAAAAAAAATGTTGAAGTTGATATGGGTTTGGATTCTATTTCATCTGGGTCTAAAAGAAAGAGGGTCAAAGATGAACCTTTTGTGATGATGGATGGTGTTTCTAGCAGAACGCGTAGCAAAAATGTTACTTTGTTCGGTTGTCTTTCACTTGATGGTTCATCTTTAAAGCGGAGAAAAAGTGATGAAGATGATATGGGTTTAAAATCTGTTTCTGGGTCTAAAGAAAGGAAGGTAAATGAAGACGTTGAAGGGTTGGAGCAATGTGATGAGAAGAAGCTTGAGGGTGATATTGATGTTATAAAGGAAATGAAACGTGATGAAAGAGGTGGGATTGATGATAAAGTTGAAAACTTTGTTGATGGAAAGTGTGATTTGGAACCTGAAAATCCAATTATAATAAGTGTGGGTGGTGTTTCTAGCCGAACTCGTAGCAAAAAAGTACCATTGTTTGATTGTCTTTCACTTGATGGTTTATCTTCTAAGAGGAGAAAGGGTGATGAAGGTGGACTGGTTCTGGGATCTGTTTCTGGGTCTGGAAAAATGAGGGTAAAGGGAGAAGTTTTAGTGGTTCCTGAGAATGATATGGTTATTTCCATCCATGATGATGTTGATGAAGAAGGGTTGGTTCAATGTGGTGAGAAATTGTTTGAGGGTGGTGTTGATGTTAAAAAGGATATGAAAAGTGGTGAAAATGGAGGAAGTGGTGATTTTGCTGATAAAGATGAAAACTTTGTTAATGAAAAGTTTTCAGATAAATCTAATGAAAGTGATGATGATGATGTGGAAGGGTCGGATCAATGTGATGAGAAGATGCTTGAGGGCAGCGTTGATGTTGTAAAGGAAGTTATAATTGATGAAAGTGGAGGAATTTTTGAGATTGGTGATAAAGATGGAAACTTTGTTGATGATGGTGGTTTAGAACCTGAAAACCCAATTACAGTAAGTGAGGCTGGTGTTTCTAGCCGAACTCGAAGCAAAAATGTTCCTTTGTTCGGTTTTCTTTCACTTGATGGTTTATCTTCAAAGAGGAGAAGGAATGATAAAGATGAAATTGCTTTGGTCTCTGTTTCTGGGTCTACAAAAATGAGGGTAAAGGGAGAAGTTTTGGTGGTTCCTGAGAATGATAAGGTTATTTCCATCCATGATGATGATGTTGATGATGAAAATGAAGAAGGGTTGCAGCAATGTGGTAAGATGTTTGAGGGTGATGTTGATGTTATAAAGGAAGTGAAATGTGATGAAAATGGAGGAAGTGGTGAAATTACGGATAAAGATGAAAACTTTGTTGATGATAAGTTTTCAAATGAATCTGGTGAAAGTGATGATGAAGAATTCTCTGTTGATGTTGATGTTGATGATGATGATGATGATGATGATGATTACGATGATGAAGAACTCTCTGTTGATGATGATGATGAAGATGAGAGTGAGGAAAATGAGACCAGTGATGAAGATTTTATAGTTGACGAGGATGATGATGGAAGTTCTCCTTATGTTAATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGGTAAGGATGATGATGGTGATGATGATGTGGAGGAGGAGGAGAAGAAGGGCTGCAGTGTTGATGATGGTAAGGAGGAGGGTGTGGAAAAGTTGTGGCAAGAATGTGCCATGATGGAAAAGCTGTTGAAAGATAAAAATAGTGAAATTTCTGAGAAGAATAATGAGGTGGTAAATATTGAGAGTAGTCCTTCTTCTGTTAAGAACGACGATTTGGAACATGCAAATCATTCTAGTGTAACAACCTCTGTTCCCTTTGAGAAAAAGGGTTATTTTGAACCAATGAAGGGTTCTTCTTCCAACCTGAATAAAGTATCCGAGAAAAGCAAATCAAAGAGTGCAGGAATAATAAACATGCAAAATGTCAGTGGTGAAGATGATGTTCAAGTTATTGGTTCTTCTAAGCTTCACAAGGGTGAGACAAATAATGCCAAAGCAAAAGCAAAAGCCAAAGATTATGTTAAAGCTAATGACATTGTGAATGTTGATGATTATGATGAAGGAAAACAACATGGCGAAGGTTTAGCTGTTCGAGGAGTTTCTTTGTTTCAAGCAAAACAAGAAAATATGTGGTTTGCAGATACACAAAAAATGCCGGAGAACAAAGGAAGGGATTATAAAGGTAGAGTTAACTTCTGGAATGGTGAGAAGAAGGCAACCGTGGAAAACAATGGTTTAAATCAAAGGGTAAACAGCACACTGTTTATGCGGAAGGAGTTGCGTTTAGCTAAACTCCTTGCTGACTGCTATTGGGGTGACAAGAATGATACCATGAAGAATGATTCAACTCTATTGGAGATCAAGGATATCGCTGTTGATCAGAGAGATACACGGCCACCACCGGTTTGTGTAGAGACACCATCATTGATATGGAGCCTAAAAAAGGTTGAAAAAGTGGAAAAGACTAAAGAGGAGGAGGAGCAGGAAATGTTATGGGATGAAGTGGATACATCCCTTAGAGAATTAGAAGCTGAATCCATGATTGGAAGTTTAGGGACAAATGAAGTTAAGCAAGAAAACAAGGGAAATCGCTGTGAACATGATACTCGTCTCGACGACGAGATTGGTGTATATTGCAGATGGTGTGGTGTGGTTTTCACTGAGATCAAATATATCTCACCACTGGTGGTGGATCGATTTCCCTGTGAAGGTTCTGGAAAAAGAACTTCATTTGATGATTCAGTTAACACGTCACTCTTTGATGGATCTCAATTCAATGTTTCCGATGAAGAATCAGTGCCGAATTTCTCTTATAATGAAGGCACAGTTTGGGACCTAATTCCTGGTGTGAAACAAACTTTATATCCTCACCAACAAGAAGGCTTTGAGTTCATTTGGAAAAACCTGGCAGGAAACATTCATCTGCACAAGTTGAAGAACGCCAATCCTCGCAGAGAGGGTGGCTGCATTATCTCGCATGCTCCTGGAACTGGAAAGACAAGGTTGACAATAATGTTTCTCATGGCATATATGAAAGTGTTCCCGAAATGCTTTCCGGTTATTGTTGCTCCTGCGGGTTTGTTACTTACTTGGGAAGATGAGTTCAAAAAATGGGACATTGGAGTTCCATTTCACAATCTAAACAGTTCTGAGTTATCTGGGAAAGAGCACGATGATGCTGTTAATTGGTCTAATACACGGCAAAGTAAGGAAGAGATACGGATGGTAAAACTGATTTCATGGTTCAAAGAAAAGAGCATTCTGGGAATAAGTTACACTTTGTACAAGAACCTAGCCGGCGGAGAATTCAAAGATAAGAAAAAAAAGAAAAAACAACATGCTGAAAAAATGAAAAAGGAAAAACATGCAGATGTGGAGAAGAGAGAAGAAAATGATGTTATGCGAAAGGTTCTACTCGAAGTTCCTCGTTTGTTAATTCTAGATGAAGGGCATACACCGAGAAATCGAAGAAGTAATATTTGGAAGGTGTTATCAGAAGTTCAAGCGCGTAAACGAATTATTCTTTCAGGAACTCCTTTTCAAAATAACTTGTTGGAACTTTACAACACATTTAGCTTAGTGAAGCCTTCTTTTCCTAACACGATACCTCATGAGCTGAAAAAATTTTGCGAACGCAAAAGTGCATCGAAAGAATCGAAAGAATGGAGTTGGGAAGTGGATTCTGGCAATAGCACACCAATGAGCAATCCTTCTGATGTTAAGATCAAGCAGTTGAAAATGCTTATGGATCCGTTTGTTCATGTGCATAAAGGAGCAATCCTTCAAAAGAAGCTTCCCGGGTTAAGAGATTGTGTGCTGATTTTGAAGCCGGACAGTTTCCAGAAGCAAATTATCGAGAGCATTCAAAGTGATCAGAATATATTGATCTTTGAACGTAAGCAGACAGTGGCGTCTGTCCATCCATCTCTTTTCCTCCAATGCAAACTCTTGGAGGAAGAAGAATCTGTTGTTGACAAGGATCGGCTAGAAAAGCAATGGTTAAATCTATATGGCGGTGTCAAAACAAAGTTTTTGTTGGAGTTTGTTAAACTTTGTGATGCTTATAATGAGAAAGTTCTAGTCTTCAGTCAATTCCTTGATACTTTAAGCTTAATTGAAGACCAATTAAACTCGGTTTTTAAATGGACCCAGGGAAAGGAAATTCTGTACTTGGATGGAAATGTTGATCCAAACGAAAAGCAGTCCCGAATCCATAGCTTCAATGATGCAAGTTCCCAAGCAAAGATTATGCTTGCTTCAACGAGAGCTTGTTCCGAGGGAATCAGCTTAGTTGGTGCTTCAAGGGTTGTGCTACTCGACGTTGTATGGAATCCATCTGTAGAACGACAGGCTATCAGCAGAGCCTATCGGATCGGACAGAAGAGGGTTGTGTACACTTACCATCTTCTCACTCAAGGGACTGCTGAATATGCAAAATATTGTAAACAGGCCCAGAAGGACCGGTTATCTGAACTCGTGTTTACAGCCAAAAATGCAGATAATGATGATGAATCGAAGAGCTGCACTGTGAACATTGAAGATAGAATTCTCGATCAAATGATGCGGCACGAAAAGCTCAAAGACATGTTTGTTAAGTGTGTGGTACAGCCGAAGGATCAAGATTTGGTCGATAGTTTCGGCTATTGA 4755 0.3901 MAAVSSGTRSKMAGVSSRTRSKNIPLFGCLSLNRSSKRKKNVEVDMGLDSISSGSKRKRVKDEPFVMMDGVSSRTRSKNVTLFGCLSLDGSSLKRRKSDEDDMGLKSVSGSKERKVNEDVEGLEQCDEKKLEGDIDVIKEMKRDERGGIDDKVENFVDGKCDLEPENPIIISVGGVSSRTRSKKVPLFDCLSLDGLSSKRRKGDEGGLVLGSVSGSGKMRVKGEVLVVPENDMVISIHDDVDEEGLVQCGEKLFEGGVDVKKDMKSGENGGSGDFADKDENFVNEKFSDKSNESDDDDVEGSDQCDEKMLEGSVDVVKEVIIDESGGIFEIGDKDGNFVDDGGLEPENPITVSEAGVSSRTRSKNVPLFGFLSLDGLSSKRRRNDKDEIALVSVSGSTKMRVKGEVLVVPENDKVISIHDDDVDDENEEGLQQCGKMFEGDVDVIKEVKCDENGGSGEITDKDENFVDDKFSNESGESDDEEFSVDVDVDDDDDDDDDYDDEELSVDDDDEDESEENETSDEDFIVDEDDDGSSPYVNDDDDDDDDDDDDDDDDDDDGKDDDGDDDVEEEEKKGCSVDDGKEEGVEKLWQECAMMEKLLKDKNSEISEKNNEVVNIESSPSSVKNDDLEHANHSSVTTSVPFEKKGYFEPMKGSSSNLNKVSEKSKSKSAGIINMQNVSGEDDVQVIGSSKLHKGETNNAKAKAKAKDYVKANDIVNVDDYDEGKQHGEGLAVRGVSLFQAKQENMWFADTQKMPENKGRDYKGRVNFWNGEKKATVENNGLNQRVNSTLFMRKELRLAKLLADCYWGDKNDTMKNDSTLLEIKDIAVDQRDTRPPPVCVETPSLIWSLKKVEKVEKTKEEEEQEMLWDEVDTSLRELEAESMIGSLGTNEVKQENKGNRCEHDTRLDDEIGVYCRWCGVVFTEIKYISPLVVDRFPCEGSGKRTSFDDSVNTSLFDGSQFNVSDEESVPNFSYNEGTVWDLIPGVKQTLYPHQQEGFEFIWKNLAGNIHLHKLKNANPRREGGCIISHAPGTGKTRLTIMFLMAYMKVFPKCFPVIVAPAGLLLTWEDEFKKWDIGVPFHNLNSSELSGKEHDDAVNWSNTRQSKEEIRMVKLISWFKEKSILGISYTLYKNLAGGEFKDKKKKKKQHAEKMKKEKHADVEKREENDVMRKVLLEVPRLLILDEGHTPRNRRSNIWKVLSEVQARKRIILSGTPFQNNLLELYNTFSLVKPSFPNTIPHELKKFCERKSASKESKEWSWEVDSGNSTPMSNPSDVKIKQLKMLMDPFVHVHKGAILQKKLPGLRDCVLILKPDSFQKQIIESIQSDQNILIFERKQTVASVHPSLFLQCKLLEEEESVVDKDRLEKQWLNLYGGVKTKFLLEFVKLCDAYNEKVLVFSQFLDTLSLIEDQLNSVFKWTQGKEILYLDGNVDPNEKQSRIHSFNDASSQAKIMLASTRACSEGISLVGASRVVLLDVVWNPSVERQAISRAYRIGQKRVVYTYHLLTQGTAEYAKYCKQAQKDRLSELVFTAKNADNDDESKSCTVNIEDRILDQMMRHEKLKDMFVKCVVQPKDQDLVDSFGY 1584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00998 1584 SMART ultradead3 986 1241 IPR014001 -
Trre14g00998 1584 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1380 1536 IPR001650 -
Trre14g00998 1584 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1179 1540 IPR027417 -
Trre14g00998 1584 MobiDBLite consensus disorder prediction 94 121 - -
Trre14g00998 1584 Gene3D - 962 1271 IPR038718 -
Trre14g00998 1584 MobiDBLite consensus disorder prediction 449 473 - -
Trre14g00998 1584 Coils Coil 592 619 - -
Trre14g00998 1584 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1016 1233 IPR014001 -
Trre14g00998 1584 MobiDBLite consensus disorder prediction 261 280 - -
Trre14g00998 1584 MobiDBLite consensus disorder prediction 474 572 - -
Trre14g00998 1584 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 430 1577 IPR044567 GO:0080188
Trre14g00998 1584 MobiDBLite consensus disorder prediction 1142 1164 - -
Trre14g00998 1584 Pfam Helicase conserved C-terminal domain 1388 1495 IPR001650 -
Trre14g00998 1584 Pfam SNF2-related domain 1008 1338 IPR000330 GO:0005524|GO:0140658
Trre14g00998 1584 Gene3D - 1298 1579 IPR027417 -
Trre14g00998 1584 SMART helicmild6 1406 1495 IPR001650 -
Trre14g00998 1584 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 978 1247 IPR027417 -
Trre14g00998 1584 CDD SF2_C_SNF 1377 1506 - -
Trre14g00998 1584 MobiDBLite consensus disorder prediction 610 637 - -
Trre14g00998 1584 MobiDBLite consensus disorder prediction 449 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00998 Trre-Chr14 8448714 8454330 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00998 1393 1525 RAD5 or RAD16-like Gene Family AT5G43530 38.346 2.77e-17 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre14g00998 SNF2_N 1.6e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00998 K10875 - gmx:100806733 873.233