Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00997 ATGAAAGGTTCTTCTTCTTCTTCTTCAAACCAAGAAGCATCACAGAAACAGAAAGCGAAAAGTGTGGAAAAAAAAGTCTCTGATGTTTCTGATTGTCATGAAGGAAACCAGCAACATGGCAAGAGAAGTTGGAATAATTCAGACAAAGAGAAAAAAGTGGAGAGCAATGCTTTCAATTATCAGAGGGGACAGAGGGCCAAAAGCGCGTATTTCACAACGAAGGATTTGAGTTTAGTGAAGCTTCTCTCTGAATGCTATTCTGACAAGAAGAATAGCACGAAAAATGATCCGGTTCTGTTGGAGGGGTATAGCGATAATGACGATGATGATGATGATGATGATGTTAATCAGTGTGATACACGGAAACCGCCGGTTTGTGTTGAGACACCTCTGATATGGAGCCTAAAAAAGGTTCAAGAAGTGGAATTGACTGAAGAGGAGGAGGAGGAACGGAGGAAGAATGAAGTGTTAAAGCCGATATGGGATGAAATGGAAATGTTAATTAATGAATCAGAAGCTGAATCCAAGATTGGAAATTTAGGTATAAATGAAGCTACAGAAGAAAACAATGGAAGTCCATCATCTCACTGTGAGCATGACATTATTTACGACGAAGAGATTGGTGATTATTGCAAATCGTGTGGTACGGTTATTACTGAGAGCAAATATAAGACACAACTAGTGAGGGATAGTTTTCCCAACGAAGGATACGAAAAAAGAGCTTCATCGGAGGATTCAGGAAATGCCTCGCTCATTGGTTGCTCTCAGTCTCAGTTCAATGCTTCTGATGGTGATTTAGATGCTAATTTCTGTCATAAAAAAGGAACAGTTTGGGACCTAATTCCTGAAGTGAAAGAAACATTGTATCCTCATCAACAGGAAGGTTTTGAAGTCATTTGGAAAAACTTGGCAGGAAGCATCAAACTTCGAAAGTTGAAGAACGCGGATCCTGACAGAGAGGGTGGCTGCATTATTTCACATGCTCCTGGAACTGGAAAAACTAGGTTAACTATTGTGTTCCTCATGGCTTATTTGAAAGTATTCCCTAAATGCTTTCCGGTTATCATTGCTCCTTCGGGTTTGTTACATACTTGGGAAGACGAGTTCAAAAAATGGAACATCGGAGTTCCATTTCACAATTTAAACAATGAGGAGTTATCTGGTAAAGAGCATGATGATGCTGTTAATGAGCTTAATTTGTCTAATGCACAGCATAGTAAGGAAGATACGCGGATGGTGAAACTGATATCATGGTACAAAGAAACGAGCATTCTTGGAATCAGTTACACTTTGTATAAGAAACTAGCTGGTGCAGTGCAATCTGAAAATAAGAAAATGAAAAACCAAGCAAGTGCGCAGAAAAGAAAAGAAATGGGAAAATCTTTGCGTGAAGTTCCTGGTTTGTTGGTGCTAGATGAAGGACACACACCGAGAAACAGAAGCAGTGGTATCTGGAAGGTGTTTTCGGAAATTTCAACAAAGAAGCGAATTATACTGTCAGGAACTCCTTTCCAGAACAACTGCTTGGAACTTTATAACACCCTCAGCCTTGTGAAGCCTTCTTTTCCGAACATGTTACCGCAGGAGCTGAAAAAGTTTTGCCAGAAGCAAGAACATAAGAAGGCATCATCGAAGGAATGGAGCTGGGAACCAGATTCTGTCAGTAGTAAAACATCTGATGAGAATATTCAGCAGTTGAAGTTGATTATGGATCCGATTGTGCACGTTCACAAAGGCGATATTCTTCAAAAGAAGCTTCCGGGGCTAAAAAACTGCGTGCTGCGTCTGAAGCCTGACAGTTTCCATCAGCAAATTCTCAAGAGTTTTGATAGTTCTCAGAACGCATTGATATTTGAGAATAATCAAACAATGGTGTCAGTCCATCCATCTCTTTTCCTTGAATGCACACTCTCGGAACATGAAGAATCTTCTGTCGACAAGGACCGGTTAGAGAAGCTTAGACTGAATCATAAAGCAGGCGTCAAAACAAGGTTTCTGGTCGAGTTCGTTAGTCTTTGTGCTGCTGCCAATGAAAAGGTTCTCGTGTTCAGCCAGTACCTCCGTCCTTTACACTTGATCATTGAACAATTAAAGTCGGCATTAAAATGGACCAAGGATGAGGATATTCTGTACATGGATGGACAGGTTAACGACAGGCAATCCTTAATCTGTAGATTCAATGATGCAAACAGCCATGCGAAGATTCTCCTTGCATCAACAAGAGCTTGTTCCGAGGGAATCAGCTTAGTCGGAGCTTCGAGGGTTGTACTCCTAGATGTCGAATGGAATCCGGCCGTTGAAAAACAGGCTATAAGCAGGGCTTATAGAATTGGGCAGCAGAAGGTTGTCTACACATACCACCTTCTCACTCAAGGTACAAGAGAGTGCGACAAATACTGTAAACAGATTCAAAAGTACAGGCTGTCTGAACTTATTTTTTCGGCTAAAAATGCCGACATCAATGACGAGTCAAAAAGCCGTGCAGCGAACATTGAAGATAGAATTCTGGATAAGATGATTCGGCACGAAAATCTCAAAGACTTGTTTGATGATTGTGTGATACAGGTCGAAGGAGCGAAAATGTAA 2586 0.4091 MKGSSSSSSNQEASQKQKAKSVEKKVSDVSDCHEGNQQHGKRSWNNSDKEKKVESNAFNYQRGQRAKSAYFTTKDLSLVKLLSECYSDKKNSTKNDPVLLEGYSDNDDDDDDDDVNQCDTRKPPVCVETPLIWSLKKVQEVELTEEEEEERRKNEVLKPIWDEMEMLINESEAESKIGNLGINEATEENNGSPSSHCEHDIIYDEEIGDYCKSCGTVITESKYKTQLVRDSFPNEGYEKRASSEDSGNASLIGCSQSQFNASDGDLDANFCHKKGTVWDLIPEVKETLYPHQQEGFEVIWKNLAGSIKLRKLKNADPDREGGCIISHAPGTGKTRLTIVFLMAYLKVFPKCFPVIIAPSGLLHTWEDEFKKWNIGVPFHNLNNEELSGKEHDDAVNELNLSNAQHSKEDTRMVKLISWYKETSILGISYTLYKKLAGAVQSENKKMKNQASAQKRKEMGKSLREVPGLLVLDEGHTPRNRSSGIWKVFSEISTKKRIILSGTPFQNNCLELYNTLSLVKPSFPNMLPQELKKFCQKQEHKKASSKEWSWEPDSVSSKTSDENIQQLKLIMDPIVHVHKGDILQKKLPGLKNCVLRLKPDSFHQQILKSFDSSQNALIFENNQTMVSVHPSLFLECTLSEHEESSVDKDRLEKLRLNHKAGVKTRFLVEFVSLCAAANEKVLVFSQYLRPLHLIIEQLKSALKWTKDEDILYMDGQVNDRQSLICRFNDANSHAKILLASTRACSEGISLVGASRVVLLDVEWNPAVEKQAISRAYRIGQQKVVYTYHLLTQGTRECDKYCKQIQKYRLSELIFSAKNADINDESKSRAANIEDRILDKMIRHENLKDLFDDCVIQVEGAKM 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00997 861 Pfam Helicase conserved C-terminal domain 673 778 IPR001650 -
Trre14g00997 861 Pfam SNF2-related domain 297 626 IPR000330 GO:0005524|GO:0140658
Trre14g00997 861 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 665 824 IPR001650 -
Trre14g00997 861 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 467 827 IPR027417 -
Trre14g00997 861 Gene3D - 584 856 IPR027417 -
Trre14g00997 861 MobiDBLite consensus disorder prediction 1 59 - -
Trre14g00997 861 MobiDBLite consensus disorder prediction 93 116 - -
Trre14g00997 861 SMART ultradead3 284 531 IPR014001 -
Trre14g00997 861 Gene3D - 266 569 IPR038718 -
Trre14g00997 861 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 314 521 IPR014001 -
Trre14g00997 861 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 8 855 IPR044567 GO:0080188
Trre14g00997 861 MobiDBLite consensus disorder prediction 1 16 - -
Trre14g00997 861 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 278 572 IPR027417 -
Trre14g00997 861 CDD SF2_C_SNF 662 789 - -
Trre14g00997 861 SMART helicmild6 691 778 IPR001650 -
Trre14g00997 861 MobiDBLite consensus disorder prediction 17 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00997 Trre-Chr14 8435796 8439123 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00997 677 835 RAD5 or RAD16-like Gene Family AT5G05130 37.037 1.95e-14 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre14g00997 SNF2_N 1.9e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00997 K10875 - gmx:100812737 801.586