Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00996 ATGGCTGGTGGTGTTTCAAGCAGAACACGTAGCAAGAAGGTTCCATTGTTTCAAAGGCCTTTACCTGATTCTTCATCTTCAAAGAGAAGAAAGAAGAATGATGAAGATATCAGCTTGGAATCTTCTTCTGGGTCGAAAAGAAGAAGATTAAAAGATGAAGCTTTTCTGGTTCCTGATAATGCTGAAGTTATTTCTCTTGACGATGAAGATGAAGTTAAAATTGATGAAAGCGGTTTGGATTGTGAAAACCCTATTACATTATGTTCTGATGAAGAACAAGATGATGTAATTTTCGGTGAAGATGAAAATGTGGTTTTCTTGGATGATTCCGATGATGATGAGAGTGAAGACGATGAAACAAGTGACAAAGATTTTAAAGCGGATGAACTGAATGAGGTTTCGGACGATGACGATGATGACAGTTACGAAGATGAACAGAAGAAGAAAAAGAGAATGAGAACAGATTTTGATATGGTGGAGGAGCTTGAGAGAGAGGTGATGGATAAAGAAAGTGAAATTTCTATACACAATGAAGAAAGTGAAATTTCTGTAACAAATTCTACTACCATCATTGAGAAGAAGAAGAAAGGTTCTTTTGATTCAATGAAAGGTTCTTCTTCTTCTTCTTCAAACCAAGAAGCATCACAGAAACAGAAAGCGAAAAGTGTGGAAAAAAAAGTCTCTGATGTTTCTGATTGTCATGAAGGAAACCAGCAACATGGCAAGAGAAGTTGGAATAATTCAGACAAAGAGAAAAAAGTGGAGAGCAATGCTTTCAATTATCAGAGGGGACAGAGGGCCAAAAGCGCGTATTTCACAACGAAGGATTTGAGTTTAGTGAAGCTTCTCTCTGAATGCTATTCTGACAAGAAGAATAGCACGAAAAATGATCCGGTTCTGTTGGAGGGGTATAGCGATAATGACGATGATGATGATGATGATGATGTTAATCAGTGTGATACACGGAAACCGCCGGTTTGTGTTGAGACACCTCTGATATGGAGCCTAAAAAAGGTTCAAGAAGTGGAATTGACTGAAGAGGAGGAGGAGGAACGGAGGAAGAATGAAGTGTTAAAGCCGATATGGGATGAAATGGAAATGTTAATTAATGAATCAGAAGCTGAATCCAAGATTGGAAATTTAGGTATAAATGAAGCTACAGAAGAAAACAATGGAAGTCCATCATCTCACTGTGAGCATGACATTATTTACGACGAAGAGATTGGTGATTATTGCAAATCGTGTGGTACGGTTATTACTGAGAGCAAATATAAGACACAACTAGTGAGGGATAGTTTTCCCAACGAAGGATACGAAAAAAGAGCTTCATCGGAGGATTCAGGAAATGCCTCGCTCATTGGTTGCTCTCAGTCTCAGTTCAATGCTTCTGATGGTGATTTAGATGCTAATTTCTGTCATAAAAAAGGAACAGTTTGGGACCTAATTCCTGAAGTGAAAGAAACATTGTATCCTCATCAACAGGAAGGTTTTGAAGTCATTTGGAAAAACTTGGCAGGAAGCATCAAACTTCGAAAGTTGAAGAACGCGGATCCTGACAGAGAGGGTGGCTGCATTATTTCACATGCTCCTGGAACTGGAAAAACTAGGTTAACTATTGTGTTCCTCATGGCTTATTTGAAAGTATTCCCTAAATGCTTTCCGGTTATCATTGCTCCTTCGGGTTTGTTACATACTTGGGAAGACGAGTTCAAAAAATGGAACATCGGAGTTCCATTTCACAATTTAAACAATGAGGAGTTATCTGGTAAAGAGCATGATGATGCTGTTAATGAGCTTAATTTGTCTAATGCACAGCATAGTAAGGAAGATACGCGGATGGTGAAACTGATATCATGGTACAAAGAAACGAGCATTCTTGGAATCAGTTACACTTTGTATAAGAAACTAGCTGGTGCAGTGCAATCTGAAAATAAGAAAATGAAAAACCAAGCAAGTGCGCAGAAAAGAAAAGAAATGGGAAAATCTTTGCGTGAAGTTCCTGGTTTGTTGGTGCTAGATGAAGGACACACACCGAGAAACAGAAGCAGTGGTATCTGGAAGGTGTTTTCGGAAATTTCAACAAAGAAGCGAATTATACTGTCAGGAACTCCTTTCCAGAACAACTGCTTGGAACTTTATAACACCCTCAGCCTTGTGAAGCCTTCTTTTCCGAACATGTTACCGCAGGAGCTGAAAAAGTTTTGCCAGAAGCAAGAACATAAGAAGGCATCATCGAAGGAATGGAGCTGGGAACCAGATTCTGTCAGTAGTAAAACATCTGATGAGAATATTCAGCAGTTGAAGTTGATTATGGATCCGATTGTGCACGTTCACAAAGGCGATATTCTTCAAAAGAAGCTTCCGGGGCTAAAAAACTGCGTGCTGCGTCTGAAGCCTGACAGTTTCCATCAGCAAATTCTCAAGAGTTTTGATAGTTCTCAGAACGCATTGATATTTGAGAATAATCAAACAATGGTGTCAGTCCATCCATCTCTTTTCCTTGAATGCACACTCTCGGAACATGAAGAATCTTCTGTCGACAAGGACCGGTTAGAGAAGCTTAGACTGAATCATAAAGCAGGCGTCAAAACAAGGTTTCTGGTCGAGTTCGTTAGTCTTTGTGCTGCTGCCAATGAAAAGGTTCTCGTGTTCAGCCAGTACCTCCGTCCTTTACACTTGATCATTGAACAATTAAAGTCGGCATTAAAATGGACCAAGGATGAGGATATTCTGTACATGGATGGACAGGTTAACGACAGGCAATCCTTAATCTGTAGATTCAATGATGCAAACAGCCATGCGAAGATTCTCCTTGCATCAACAAGAGCTTGTTCCGAGGGAATCAGCTTAGTCGGAGCTTCGAGGGTTGTACTCCTAGATGTCGAATGGAATCCGGCCGTTGAAAAACAGGCTATAAGCAGGGCTTATAGAATTGGGCAGCAGAAGGTTGTCTACACATACCACCTTCTCACTCAAGGTACAAGAGAGTGCGACAAATACTGTAAACAGATTCAAAAGTACAGGCTGTCTGAACTTATTTTTTCGGCTAAAAATGCCGACATCAATGACGAGTCAAAAAGCCGTGCAGCGAACATTGAAGATAGAATTCTGGATAAGATGATTCGGCACGAAAATCTCAAAGACTTGTTTGATGATTGTGTGATACAGGTCGAAGGAGCGAAAATGTAA 3189 0.4001 MAGGVSSRTRSKKVPLFQRPLPDSSSSKRRKKNDEDISLESSSGSKRRRLKDEAFLVPDNAEVISLDDEDEVKIDESGLDCENPITLCSDEEQDDVIFGEDENVVFLDDSDDDESEDDETSDKDFKADELNEVSDDDDDDSYEDEQKKKKRMRTDFDMVEELEREVMDKESEISIHNEESEISVTNSTTIIEKKKKGSFDSMKGSSSSSSNQEASQKQKAKSVEKKVSDVSDCHEGNQQHGKRSWNNSDKEKKVESNAFNYQRGQRAKSAYFTTKDLSLVKLLSECYSDKKNSTKNDPVLLEGYSDNDDDDDDDDVNQCDTRKPPVCVETPLIWSLKKVQEVELTEEEEEERRKNEVLKPIWDEMEMLINESEAESKIGNLGINEATEENNGSPSSHCEHDIIYDEEIGDYCKSCGTVITESKYKTQLVRDSFPNEGYEKRASSEDSGNASLIGCSQSQFNASDGDLDANFCHKKGTVWDLIPEVKETLYPHQQEGFEVIWKNLAGSIKLRKLKNADPDREGGCIISHAPGTGKTRLTIVFLMAYLKVFPKCFPVIIAPSGLLHTWEDEFKKWNIGVPFHNLNNEELSGKEHDDAVNELNLSNAQHSKEDTRMVKLISWYKETSILGISYTLYKKLAGAVQSENKKMKNQASAQKRKEMGKSLREVPGLLVLDEGHTPRNRSSGIWKVFSEISTKKRIILSGTPFQNNCLELYNTLSLVKPSFPNMLPQELKKFCQKQEHKKASSKEWSWEPDSVSSKTSDENIQQLKLIMDPIVHVHKGDILQKKLPGLKNCVLRLKPDSFHQQILKSFDSSQNALIFENNQTMVSVHPSLFLECTLSEHEESSVDKDRLEKLRLNHKAGVKTRFLVEFVSLCAAANEKVLVFSQYLRPLHLIIEQLKSALKWTKDEDILYMDGQVNDRQSLICRFNDANSHAKILLASTRACSEGISLVGASRVVLLDVEWNPAVEKQAISRAYRIGQQKVVYTYHLLTQGTRECDKYCKQIQKYRLSELIFSAKNADINDESKSRAANIEDRILDKMIRHENLKDLFDDCVIQVEGAKM 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00996 1062 Gene3D - 785 1057 IPR027417 -
Trre14g00996 1062 MobiDBLite consensus disorder prediction 1 52 - -
Trre14g00996 1062 MobiDBLite consensus disorder prediction 178 192 - -
Trre14g00996 1062 MobiDBLite consensus disorder prediction 143 177 - -
Trre14g00996 1062 MobiDBLite consensus disorder prediction 106 123 - -
Trre14g00996 1062 MobiDBLite consensus disorder prediction 24 52 - -
Trre14g00996 1062 MobiDBLite consensus disorder prediction 218 257 - -
Trre14g00996 1062 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 866 1025 IPR001650 -
Trre14g00996 1062 MobiDBLite consensus disorder prediction 106 260 - -
Trre14g00996 1062 Gene3D - 467 770 IPR038718 -
Trre14g00996 1062 SMART ultradead3 485 732 IPR014001 -
Trre14g00996 1062 Coils Coil 159 179 - -
Trre14g00996 1062 MobiDBLite consensus disorder prediction 201 217 - -
Trre14g00996 1062 Pfam SNF2-related domain 498 827 IPR000330 GO:0005524|GO:0140658
Trre14g00996 1062 CDD SF2_C_SNF 863 990 - -
Trre14g00996 1062 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 27 1056 IPR044567 GO:0080188
Trre14g00996 1062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 668 1028 IPR027417 -
Trre14g00996 1062 SMART helicmild6 892 979 IPR001650 -
Trre14g00996 1062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 773 IPR027417 -
Trre14g00996 1062 Pfam Helicase conserved C-terminal domain 874 979 IPR001650 -
Trre14g00996 1062 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 515 722 IPR014001 -
Trre14g00996 1062 MobiDBLite consensus disorder prediction 68 94 - -
Trre14g00996 1062 MobiDBLite consensus disorder prediction 294 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00996 Trre-Chr14 8435796 8439726 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00996 878 996 RAD5 or RAD16-like Gene Family AT5G05130 40.164 2.87e-14 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre14g00996 SNF2_N 2.9e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00996 K10875 - gmx:100812737 807.364