Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00995 ATGGTTGGTGTTTCAAGCCGAACTCGTAGCAAAACTGTTCCTTTGTTTTCTGGTCTTTCACTTGGCCGTTCATCTTCAAAGAGGAAAAAGATTGATGAAGATGTTATGAGTTTGGAATCTGTTTCTGGGTCTAAGAGAAGAAAGGAAAAAAATGAATCTTTTGTGTTTTCTAAGAATGATGAAGTTATTTTTATAGATGATGATGATTATGTTGAAGAAGGGTCTGAACATTGTGATGTTGATGTTGAAAAGGAAGTGAAAAGTTATGAGAGTGGAGGAAGTTGTGAAATTGGTGATAAAAATGGAAACTTTGTTGATGATAAAAAGTGTGGTTGGGAAAGGGAAAACCCGATTATAATGGATTCGGATGATGATGAACAGTTTGTTGGTGATGTTAGAAAGAAAGTGAAAGTTGATGAAAGTGGTGGAAGTGGTAAGTTTGTTGATAAAGATCAAATTTTTGTTGAGATAGATGATTCTGATGAGAGTGATGAAGAGGATGATGATTCAGATGAAAGTGAAGAAGATGAGACTAGTGATGAGGATTTTAATGTTGATGAGGTGAAAGAGATTATTGACGATGATGATGACAGTTCTGTGTCTTCTTTTGCTGATGATGATGATGAGGAGGAGGAGGAGGAGGTGGAGGATGAGGAGGAGGAAGAGGAAGAGAAGAAGAAAAATGGTTCGAGAAAACACTCGAATGGAAGATACTTCAATGTGGTGGAGAAGCTGGCTAGAGAGGTGAATGATGAGAAAAGTGAGGAGGAGGAGGAGGAGGAAGAGAAAAAGAAAGAGGGTTCTAAAAAGTACTTCAATGTGGTGGAGGAGGTGAGTAGAGAGGTGAATGATGAAAAAATTGGGGAGGAGGAGGAGAAGGAGAAAAAGAAGGTGGATGAGATTTTTGCTGATGTTATTGTTGATAATAATGAGAAGGAGGTTAGGGATGAGCAGACGGAGAAGAAGAATGTGAATGAGATTTCTGATTGTGATGTTGTAAGTTCAAATGATGTTATTGTTGATAATAATGAGAAGGTGGTTAGGGAGGAGGAGAAGGATAAGAAGAAGAAGAAGGTGAATGAGATTTCTGATGTTGATATTGGAAGTTCAAATGATGTTATTGTTGTTGATGATGAGGAGAAGGTTATGGATGAGGAGAAGAAGCCAAACAATGTGGTGGAAGAGGACAAAGAGGACAATTTGGATCCGTTGTGGCACGAATATCACAATTGTTTGATGGAGGAGGAGGAGCCGTTGAGAGAGGTGAAGGATCAAAAAAGTGAAATTTCTAAGAGGAATAATGAGAAGAAAAAGATTAAGACTAGTCCTGTATACAATAATGAAGTGCAGCATTCTGATTATGGAAGTGCAGCAGCCTCTACTACCTTTAATCCAATGAAGGTTTGTTCTTCGAAGCGGAATGAAGCATCAGAGAAACAAAAAGCAATGAAAAATGTCTGTCATGATGATGATAAGGTTAATGTTGCTAAATCCAAAGCCAAAGACAGTGCTAAACCTACTAAAAATGTGAAGGTTGGTGATTCTGTTAAAGGAAAAGAGCAACATGGGAAAGGTTTAGGTGTTGGAGGAGTTTCTTCGGTTCAAACCAAGCAAGAAAAGGCGGAGGATTTAGATAAACCTACTGAAAATGTGAAGGTTGGTTCTGTTGAAGGAAAAGAGCGACATGTCAAAGGTTTAGTTGTTTTAGGAGTTACTTCGGTTCAAACCAAGCAAGAAAAGGTGGAGGATTTAGATGAACCTACTGAAAATGTGAAGGTTGGTTCTGTTGAAGGAAAAGAGCGACATGTCAAAGGTTTAGGTGTCGAAGGAGTTTCTTCGGTTCAAATCAAACAAGAAAAGGTGGAGGATTTAGATAAACAGAAAATGGCGGAAAACAAACCAAGAGAAGATTGTAAAGGTGGAATTAACATCGAAAATGGTGTTAAGAAAGAACCCAAGGATAACAATGGTTTGAATCGAAGTGGCAAAAGTACACATTCTATGCCGAACAAGTTACCTTTAGCCCAATACCTTGCTGAATTGTATTTGAGAAACAAGAATGGTACCATGAAGAATGATTCCATTGTGTCGGAGATGAATGATGACGGTGTTAATCAGAAAGATACACGACAACCACCAGTTTCTGTTGAGACACCTTCGTTGAGATGGAGTCTAAAAAGGGTTGTGCAAAAGACCAAGGAGGAAGAGGAACTGGATAAGGAACTGGAGCAGATTAAACCGATATGGGATGAAATGGAAAGAGCCATGAGAGAATCAGAAGCTGAATCTGAGATTGGAATTTTAGGGACAAATAGAAGTCAATCCCGTCACTGTGAACATATCACTATTCTTGACGAAGAAATTGGTGTATATTGCAAATTGTGCGGTGATGTTATTACTGAGATGAAATATATCTCGCCGCTAGTGTTCGATAGATATCCGAATGAAGGTTCAAGAAGAAGGGCGACAATTGGTGGAGACGATGTCTCACTCATTGATCGGTCTCACTTCAATGTTTCTGATGATGACTTGAAGGATAATGTTTCTCATACTGAAGTCACAGTTTGGGACAAAATTCCTGATGTGAAACAAACCTTATATCCTCACCAACAAGAAGGCTTTGAGTTTATATGGAAAAACTTGGCTGGAAGTATCGAGCTTCAAACGTTAAAGAATGCTGATCCTCTTGGCGAAGGTGGCTGCATTATTTCTCATGCTCCTGGAACCGGAAAGACAAGGCTGACAATAGTGTTTCTCAAGTCATATTTGAAGTTGTTTCCAAAATGCTTGCCGATTGTTGTCGCTCCTGCTAGTTTACTACTAACTTGGGAAGAGGAATTCAAGAAATGGGACGTCGGAGTTCCATTTCACAATTTAAGCAATTTAGAGTTATCCGGTAAAGAGCATGCTGATGTGTTTAACAGATTCAGTCGGTTTAATACGCGGAATCATATGGACGAAACACGAATGGCGAAACTGATTTCGTGGTACAAAGAAACAAGCATTCTTGGAATCAGCTATAGTTTATATGGATCAATTTGCAATGATAAGGAAAAGAAAAAGAATGAAAATGTGAAGGCGAGAAAAGGAAACTTTGATATACGAAAAGTTCTACTCGAAGCTCCTGGTTTGTTAGTTTTGGATGAAGGACATACACCTAGAAATCAAAGAAGTCATATTTGGAAGGTGTTGACGAAGAAGAGTCAAACGCAGAAGCGAATCATCCTTTCTGGAACTCCATTCCAGAATAATTTCTGGGAGCTTTACTGCACTTTGAGCTTAGTAAAGCCTTCATTTCCTCACAAGATACCGCCTGAGCTAAAAAGGTTTTGCCTTAAGCAGAGACTTAAATCATCTGAAAAATATGGTTGGGAACAAGTTTCAGGCAACACAGCAAGAAACCCTTCCGATGATGATGATGGGATCGAGAAGTTGAAATTGCTAATGGATCCCTTTGTTCATGTTCACAAAGGTGCGATCCTTGAAAGTAAGCTTCCCGGGTTAAAGGAATGCTTGGTGACTTTGAAGGCAGGTAGTTTGCAGAATGAAATTCTGAAAGGAATTAAACGTTCTCAGAACAGAATCTTTAACTTTGAGCGTAAGATTGCATTGACATCCGTTCATCCATCTCTTTTCCTTGAGTGTGATCTTTCTGAAGCAGAAAAATCTGTACTCGACAAGGATCGGCTAAAACAGATTAGACTGAACCCACATGAAGGTGTCAAAACAAAGTTTGTGTACGAGTTTGTTCGGCTGTGTGATGCTTCTAATGAGAAAGTTCTTGTTTTCAGCCAATTCCATGCTCCTTTACTATTAATTAAAGACCAATTAAACTCGGTTTTTAACTGGTCTGACGGAGAAGTGCTGTTCATGTCTAGCAGAGATTCTCCAAAGGATAAGCAGTCCATAATCCATAGCTTCAATGATGAAAATAACAAAGCGAAGGTTCTACTTGCAGCTACAAAAGCTTGTTCCGAGGGAATTAGCTTAGTTGGAGCTTCAAGGGTTGTGCTTCTTGATGTTGTATGGAATCCTTCAGTCGAAAGACAAGCTATCAGCCGAGCCTATAGGATTGGACAGAAGAAGGTGGTATACACATACCATCTTCTCGCTGAAGGGACATCCGAGGAAGAAAAATATGGTAAACAGGCCGAAAAGGATCGGATAGCTGAGCTCCTTTTTTCAGCTAAAAATGCTACTGATAATGATGATGTGCCCAAGAGACGTGCCGTGAACTTTGAAGATAGTGTTCTTGATAAGATGACTCAGCACGAAAAACTCATAGACATGTTTGTTAAGTGCGTAGTACTGAGGAAGGAGCGTGATTTGGTCTGA 4335 0.3933 MVGVSSRTRSKTVPLFSGLSLGRSSSKRKKIDEDVMSLESVSGSKRRKEKNESFVFSKNDEVIFIDDDDYVEEGSEHCDVDVEKEVKSYESGGSCEIGDKNGNFVDDKKCGWERENPIIMDSDDDEQFVGDVRKKVKVDESGGSGKFVDKDQIFVEIDDSDESDEEDDDSDESEEDETSDEDFNVDEVKEIIDDDDDSSVSSFADDDDEEEEEEVEDEEEEEEEKKKNGSRKHSNGRYFNVVEKLAREVNDEKSEEEEEEEEKKKEGSKKYFNVVEEVSREVNDEKIGEEEEKEKKKVDEIFADVIVDNNEKEVRDEQTEKKNVNEISDCDVVSSNDVIVDNNEKVVREEEKDKKKKKVNEISDVDIGSSNDVIVVDDEEKVMDEEKKPNNVVEEDKEDNLDPLWHEYHNCLMEEEEPLREVKDQKSEISKRNNEKKKIKTSPVYNNEVQHSDYGSAAASTTFNPMKVCSSKRNEASEKQKAMKNVCHDDDKVNVAKSKAKDSAKPTKNVKVGDSVKGKEQHGKGLGVGGVSSVQTKQEKAEDLDKPTENVKVGSVEGKERHVKGLVVLGVTSVQTKQEKVEDLDEPTENVKVGSVEGKERHVKGLGVEGVSSVQIKQEKVEDLDKQKMAENKPREDCKGGINIENGVKKEPKDNNGLNRSGKSTHSMPNKLPLAQYLAELYLRNKNGTMKNDSIVSEMNDDGVNQKDTRQPPVSVETPSLRWSLKRVVQKTKEEEELDKELEQIKPIWDEMERAMRESEAESEIGILGTNRSQSRHCEHITILDEEIGVYCKLCGDVITEMKYISPLVFDRYPNEGSRRRATIGGDDVSLIDRSHFNVSDDDLKDNVSHTEVTVWDKIPDVKQTLYPHQQEGFEFIWKNLAGSIELQTLKNADPLGEGGCIISHAPGTGKTRLTIVFLKSYLKLFPKCLPIVVAPASLLLTWEEEFKKWDVGVPFHNLSNLELSGKEHADVFNRFSRFNTRNHMDETRMAKLISWYKETSILGISYSLYGSICNDKEKKKNENVKARKGNFDIRKVLLEAPGLLVLDEGHTPRNQRSHIWKVLTKKSQTQKRIILSGTPFQNNFWELYCTLSLVKPSFPHKIPPELKRFCLKQRLKSSEKYGWEQVSGNTARNPSDDDDGIEKLKLLMDPFVHVHKGAILESKLPGLKECLVTLKAGSLQNEILKGIKRSQNRIFNFERKIALTSVHPSLFLECDLSEAEKSVLDKDRLKQIRLNPHEGVKTKFVYEFVRLCDASNEKVLVFSQFHAPLLLIKDQLNSVFNWSDGEVLFMSSRDSPKDKQSIIHSFNDENNKAKVLLAATKACSEGISLVGASRVVLLDVVWNPSVERQAISRAYRIGQKKVVYTYHLLAEGTSEEEKYGKQAEKDRIAELLFSAKNATDNDDVPKRRAVNFEDSVLDKMTQHEKLIDMFVKCVVLRKERDLV 1444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00995 1444 MobiDBLite consensus disorder prediction 138 154 - -
Trre14g00995 1444 SMART ultradead3 862 1110 IPR014001 -
Trre14g00995 1444 MobiDBLite consensus disorder prediction 17 50 - -
Trre14g00995 1444 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 852 1110 IPR027417 -
Trre14g00995 1444 Coils Coil 201 232 - -
Trre14g00995 1444 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 430 1442 IPR044567 GO:0080188
Trre14g00995 1444 Pfam Helicase conserved C-terminal domain 1253 1359 IPR001650 -
Trre14g00995 1444 SMART helicmild6 1275 1359 IPR001650 -
Trre14g00995 1444 CDD SF2_C_SNF 1242 1370 - -
Trre14g00995 1444 MobiDBLite consensus disorder prediction 381 402 - -
Trre14g00995 1444 Gene3D - 835 1129 IPR038718 -
Trre14g00995 1444 MobiDBLite consensus disorder prediction 155 223 - -
Trre14g00995 1444 MobiDBLite consensus disorder prediction 629 670 - -
Trre14g00995 1444 Coils Coil 239 270 - -
Trre14g00995 1444 MobiDBLite consensus disorder prediction 138 270 - -
Trre14g00995 1444 MobiDBLite consensus disorder prediction 416 442 - -
Trre14g00995 1444 MobiDBLite consensus disorder prediction 416 447 - -
Trre14g00995 1444 Coils Coil 307 327 - -
Trre14g00995 1444 MobiDBLite consensus disorder prediction 474 521 - -
Trre14g00995 1444 MobiDBLite consensus disorder prediction 538 557 - -
Trre14g00995 1444 MobiDBLite consensus disorder prediction 629 657 - -
Trre14g00995 1444 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1042 1398 IPR027417 -
Trre14g00995 1444 MobiDBLite consensus disorder prediction 25 50 - -
Trre14g00995 1444 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1245 1400 IPR001650 -
Trre14g00995 1444 Gene3D - 1166 1433 IPR027417 -
Trre14g00995 1444 Pfam SNF2-related domain 883 1187 IPR000330 GO:0005524|GO:0140658
Trre14g00995 1444 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 892 1098 IPR014001 -
Trre14g00995 1444 MobiDBLite consensus disorder prediction 474 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00995 Trre-Chr14 8426745 8431668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00995 1257 1417 RAD5 or RAD16-like Gene Family AT5G05130 37.037 5.02e-17 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre14g00995 SNF2_N 1.1e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00995 K10875 - gmx:100806733 786.563