Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00988 ATGGCTAATCTCTCCAACTCGAGCATTCAAAATGATGAGAAACACCTTGGAGAGCAATTTAATTACATCCCACATGATGTACTACAAAATTTGGAATGGTACCCCACTTTTTCAGAAATCATGGATAGAAGTTTGCAAAAAGATTTGAATTATTTGCTCTTTTGTGACACTCATGAGAAAGAAAGTGTCAAATTGAATCAATTGAGTGAAGGAATAACACAAGAGAATGTGTCAAATGTTCATATAAATCAAGAGATGAATATTGATACAAGTTTGCCTAATATTCATAGCATCAATCATGAGTATTTACCAAAGAAAAATAATAAGAAGTCTTGTTCTACTAAGAAGAGTAAAGATAAGAGTCTCAAAGCAAAGAGCATAGATATATATGTTGAGAGAATGTGTAGCCATTGTGAGACCAAAGACACTACTCAATGGAGGTTTGGTCCTTTGGGGAAAAATACTTTATGCAATGCTTGTGGATTGCGATACAAGTCAAATCGATTGACAGAAGGGTATAAACCTAAGGCAAGTTCAAATACTGATATTACAAAACATTCAAATTTGCATAAGATCTTGTGA 582 0.3333 MANLSNSSIQNDEKHLGEQFNYIPHDVLQNLEWYPTFSEIMDRSLQKDLNYLLFCDTHEKESVKLNQLSEGITQENVSNVHINQEMNIDTSLPNIHSINHEYLPKKNNKKSCSTKKSKDKSLKAKSIDIYVERMCSHCETKDTTQWRFGPLGKNTLCNACGLRYKSNRLTEGYKPKASSNTDITKHSNLHKIL 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00988 193 ProSiteProfiles GATA-type zinc finger domain profile. 133 167 IPR000679 GO:0006355|GO:0043565
Trre14g00988 193 Gene3D - 131 191 IPR013088 GO:0006355|GO:0008270
Trre14g00988 193 CDD ZnF_GATA 135 185 IPR000679 GO:0006355|GO:0043565
Trre14g00988 193 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 173 - -
Trre14g00988 193 Pfam GATA zinc finger 135 169 IPR000679 GO:0006355|GO:0043565
Trre14g00988 193 PANTHER GATA TRANSCRIPTION FACTOR 105 191 - -
Trre14g00988 193 SMART GATA_3 131 184 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00988 Trre-Chr14 8394158 8394739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00988 97 191 C2C2-Gata Transcription Factor Family AT3G60530 42.708 2.16e-21 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre14g00988 GATA 6.7e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00988 - - tpra:123892034 293.508