Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00979 ATGGAAAATGATGCTAATGAAAACATCTTTAGCACATCCTCATTCTCTTCAACATCATCAACACCAACATCACCAACATCTTCTAACTCAAATTCAAATTCATGCACCAATCAAAATCAAGACACCAAAAATAGTCCTCAAAATGAAACCAAGAAAAGAGAGAGAAGTGAAAAAGACACAAAACACCCTACATATAGAGGAGTAAGAATGAGAGCATGGGGAAAATGGGTTAGTGAAATACGTGAGCCAAGAAAGAAATCAAGAATATGGCTTGGGACATACCCTACAGCTGAAATGGCAGCTAGAGCTCATGATGTAGCTGCCTTAGCTATAAAGGGTCATTCAGCTTACCTTAATTTCCCAAATTTGGCTCAAAATCTTCCAAGGCCTTCAACTACATCACCTAAAGACATTCAAATTGCAGCTGCAAAAGCAGCATCAACTGTTTTTGAGGAAGTTAAGGATTGCCAAGGTGAAAATGATCAACATGTACAAAATCATGAAGATCAAGGTTCTTTTTCAAGTGTGTCTTCTATAGACAATGTTCAAGAGTCTAATTCAAGTTCTCCTAATTCTACTACTACGAATGATGATATTGATGACACACTCTTCGATTTGCCGGATCTTTTTCTTGATGGTAAAAATGGTCTTCTTTCTTTTTCTTCTTCTTGGCATTTATGTAGTGTTGATAGTGGACTTCGGCTCGAGGAGCAATTTTCGTCGTCCTGGGAGTACTACTAG 741 0.3779 MENDANENIFSTSSFSSTSSTPTSPTSSNSNSNSCTNQNQDTKNSPQNETKKRERSEKDTKHPTYRGVRMRAWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPNLAQNLPRPSTTSPKDIQIAAAKAASTVFEEVKDCQGENDQHVQNHEDQGSFSSVSSIDNVQESNSSSPNSTTTNDDIDDTLFDLPDLFLDGKNGLLSFSSSWHLCSVDSGLRLEEQFSSSWEYY 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00979 246 MobiDBLite consensus disorder prediction 156 198 - -
Trre14g00979 246 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Trre14g00979 246 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Trre14g00979 246 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Trre14g00979 246 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Trre14g00979 246 MobiDBLite consensus disorder prediction 1 66 - -
Trre14g00979 246 CDD AP2 65 123 IPR001471 GO:0003700|GO:0006355
Trre14g00979 246 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Trre14g00979 246 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 42 212 - -
Trre14g00979 246 FunFam Ethylene-responsive transcription factor 2 63 122 - -
Trre14g00979 246 MobiDBLite consensus disorder prediction 1 45 - -
Trre14g00979 246 SUPERFAMILY DNA-binding domain 64 122 IPR016177 GO:0003677
Trre14g00979 246 Pfam AP2 domain 63 114 IPR001471 GO:0003700|GO:0006355
Trre14g00979 246 MobiDBLite consensus disorder prediction 167 198 - -
Trre14g00979 246 MobiDBLite consensus disorder prediction 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00979 Trre-Chr14 8337748 8338488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00979 52 239 AP2-EREBP Transcription Factor Family AT2G44940 52.174 5.53e-66 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre14g00979 AP2 3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00979 - - psat:127129327 292.737