Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00972 ATGGTGTTCTTATTTTCAAACCTTCATTCCTTGAAGCTTTTACCCTTTTGGTTGCTTCTTTCAATGTGGTTTTGTTCATCCACAATGTCACAAACTTCATCATCAACTTCTCAAACTAGAGAAGCTAATGCTTTGTTGAAGTGGAAAACAAGTCTTGACAACCAAAGTCAAACCTTACTATCTTCATGGAGTGGCAATAACTCATGCAACAACTGGCTTGGAATTACTTGTGATGAAAATTCCATGTATGTTACTAATGTAAATCTCACAAAGAAGGGATTGAAAGGTACACTCAAAAGTCTTAACTTCACATCACTTCCAAATATTCTTACTCTTGATCTTAGTTTCAACTTCTTGAATGAAAATATTCCTAACCAAATTGGAATGTTGTCCAAACTTTCTTACCTTGATCTTAGTGGCAATCTTCTCACAGGAACAATTCCAACTTCTATTGAGAATCTGATCTTATTGTCACATTTGAATCTAGATGACAACAACCTTTATGGCAACATTCCAAAAGCACTTTGGAATTTGAGCAACTTAAACTACTTAACAATGAGATTAAATAAATTTAATGGTTCTATTTTTGCTCAAGAAATTGTGAACTTGCATAAGCTAGAGACTCTAGATCTTGGTGGTAATGGTCTTTCCATTAATGGTCCTATCCTCCAAGAACTTTGGAAGTTAAAAAATTTAACATATCTTTCTTTTTATCAATGCAATGTCAAAGGGTCTATTCCATTTTCTATAGGAAAGTTGACTAAGTTATCATATCTAAATTTAGCACATAACCATATTTTTGGTCATATCCCTATAGAAATTGGGAAGTTAAGGAAGTTAGAATATCTATATATTTTTGACAATAACTTATCTGGCAATATTCCTTTAGAAATTGGGGGCTTAGTGAACATGAAAGAGATAAGGCTTAATGACAATAATCTTTCCGGTTCGATTCCTCGAGAAATCGGAATGATGAAAAATGTTGTTCAAATAGATTTAGTTAATAACTCCATCTCAGGTGAAATTCCACCAACAATTGGAAACTTGAGTAATATGCAATCTCTTTCATTTTCTATAAACTATCTCACTGGAAAACTTCCAATGGAAATGAATATGCTTGTCAGTTTGGTTACCCTACAAATTTATGATAATGACTTCATTGGTCAGTTGCCTCACAACATTTGTATTGGTGGAAACTTGAAATATTTGGTTGTTAAGAATAACCATTTCACTGGCCCAGTTCCAAACAGTTTGAAGAATTGTACTAGCATTATAAGACTTAGGCTTGAACAAAATCAACTGAATGGAAATATAACAGAAGATTTTGGTATTTATCCAAATTTGAATTACATAAATTTAGGTGAAAACAATTTTTATGGACACCTTTCATCTAATTGGGGAAAGTGTCCTAACCTGACAAGCCTCATCATTTCTAATAATAATATAACAGGCGATATACCAGTAGAAATAGGTGAGGCACACAACTTGTATACTCTTGACTTATCTTCGAACCAACTCGATGGAAAAATTCCAAAGGAGTTAAGCAACTTGACTTTGTTGACAAACCTACTGATAAGAAACAACCATCTTTCAGGAAACATTCCTGTTCAAATAGCATCCTTAGATGAACTTGATACCTTAGACTTTGCAGGAAATAATCTAAGTGGCTTCATCACAAAAGAACTTGCAATTTTGTCCAAGTTATGGAACTTAAATTTGAGCCAAAACAAATTCATAGGAAATATTCCTGTTGAATTTGGACGATTTAAAGTCCTTCGAAGTCTTGATCTTAGTGGAAATTTTTTGGATGGAACAATACCAACAATGCTTACAGAGTTGAAATACTTGGAAACATTGAATCTTGCACATAATAACCTTTCTGGCCTTATTCCTTCTGGCTTTGATCAAATGTTCAGCTTGTCATCCGTTGATATATCATATAACCAATTTGAGGGTCCACTTCCAAACATTCGAGTTTTCAATGATGCTACAATTGAAATGTTGAGAAATAATAAAGGCTTGTGTGGTAATGTATCTGGCTTGGAGCCATGCCGAACACCAAGAGGCGAATCTCGTGATCAAAAGAATAAAAAATTGATCATAGCTTTACCTCTTGCATTAGGAGGGACTCTAATGCTAGCATTAGCTTGTTTGAAATTGTCATATTATCTCTACTACCAAACATCAACCATAGGAGAAAATCAGATAGGAGGGAACATCATTGCACCTCAAAATATTTTCACAGTATGGAATTTTGATGGAAAAATGGTTTATGAGAACATTGTGGAAGCCACAGAAGAGTTTGATGACAAATATCTCATTGGAGTTGGAGGACATGGAAGTGTTTACAAAGCAAATTTGCACACAGGTCAAGTTGTTGCGGTGAAAAAGCTCCATTCAGTTGCAAATGAAGAAAATCTCATCAATCTAAATAAATCATTCACAAATGAGATTCAAGCTTTGACTTCAATTCAACATCGAAACATTGTCAAGTTATATGGATTTTGCTCACATTCACGTTTATCATTTTTGGTTTATGAGTTCATCGAGAAAGGTAGTTTGGAAAAGATTTTGAAAGATGATGAAGAAGCGATTGCATTTGATTGGAATAAGAGAGTGAATGTCATTAAAGACGTAGCTAATGCTTTATGCTACATGCACCATGATTGCTCACCTCCAATTGTTCATCGAGATATATCAAGCAAAAATATTCTTCTAGATTTCGAATGTGTGGCTCATGTATCTGACTTTGGAACTGCTAAGCTTCTTGATTTTAATTCAACCAATTCCACCTCATTTGCATGCACATTTGGATATGCTGCTCCAGAACTTGCATACACAACAAAAGTAACTGAGAAATGTGATGTGTATAGTTTTGGAATATTAGCATTGGAAATACTATTTGGAAGACATGCAGGAGATGTTACACCTTTATGGACCATTGTTAGCTCTTCTACAGTTGATGATGATACTCTGCCACTGATCTATAAGTTGGATCGACGTCTTCCTCATCCTTTTCATCCCATTGTCAAGAAGTTAGTATCGATTGCAATGATAGCTTTTGCATGTTTAATTGAAAATCCGCAATCTCGCCCTACCATGAAGCAGGTTTCCAAGGACCTTGTAATGTTAAAGTGA 3138 0.3448 MVFLFSNLHSLKLLPFWLLLSMWFCSSTMSQTSSSTSQTREANALLKWKTSLDNQSQTLLSSWSGNNSCNNWLGITCDENSMYVTNVNLTKKGLKGTLKSLNFTSLPNILTLDLSFNFLNENIPNQIGMLSKLSYLDLSGNLLTGTIPTSIENLILLSHLNLDDNNLYGNIPKALWNLSNLNYLTMRLNKFNGSIFAQEIVNLHKLETLDLGGNGLSINGPILQELWKLKNLTYLSFYQCNVKGSIPFSIGKLTKLSYLNLAHNHIFGHIPIEIGKLRKLEYLYIFDNNLSGNIPLEIGGLVNMKEIRLNDNNLSGSIPREIGMMKNVVQIDLVNNSISGEIPPTIGNLSNMQSLSFSINYLTGKLPMEMNMLVSLVTLQIYDNDFIGQLPHNICIGGNLKYLVVKNNHFTGPVPNSLKNCTSIIRLRLEQNQLNGNITEDFGIYPNLNYINLGENNFYGHLSSNWGKCPNLTSLIISNNNITGDIPVEIGEAHNLYTLDLSSNQLDGKIPKELSNLTLLTNLLIRNNHLSGNIPVQIASLDELDTLDFAGNNLSGFITKELAILSKLWNLNLSQNKFIGNIPVEFGRFKVLRSLDLSGNFLDGTIPTMLTELKYLETLNLAHNNLSGLIPSGFDQMFSLSSVDISYNQFEGPLPNIRVFNDATIEMLRNNKGLCGNVSGLEPCRTPRGESRDQKNKKLIIALPLALGGTLMLALACLKLSYYLYYQTSTIGENQIGGNIIAPQNIFTVWNFDGKMVYENIVEATEEFDDKYLIGVGGHGSVYKANLHTGQVVAVKKLHSVANEENLINLNKSFTNEIQALTSIQHRNIVKLYGFCSHSRLSFLVYEFIEKGSLEKILKDDEEAIAFDWNKRVNVIKDVANALCYMHHDCSPPIVHRDISSKNILLDFECVAHVSDFGTAKLLDFNSTNSTSFACTFGYAAPELAYTTKVTEKCDVYSFGILALEILFGRHAGDVTPLWTIVSSSTVDDDTLPLIYKLDRRLPHPFHPIVKKLVSIAMIAFACLIENPQSRPTMKQVSKDLVMLK 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00972 1045 Gene3D Ribonuclease Inhibitor 219 371 IPR032675 -
Trre14g00972 1045 SUPERFAMILY RNI-like 112 435 - -
Trre14g00972 1045 PANTHER LEUCINE RICH REPEAT KINASE 2 322 1044 - -
Trre14g00972 1045 SUPERFAMILY RNI-like 342 652 - -
Trre14g00972 1045 FunFam Nuclear pore complex protein NUP107 38 197 - -
Trre14g00972 1045 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 374 688 - -
Trre14g00972 1045 FunFam Leucine-rich receptor-like protein kinase family protein 270 368 - -
Trre14g00972 1045 Gene3D Phosphorylase Kinase; domain 1 741 848 - -
Trre14g00972 1045 Gene3D Transferase(Phosphotransferase) domain 1 849 1045 - -
Trre14g00972 1045 ProSiteProfiles Protein kinase domain profile. 768 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g00972 1045 Pfam Leucine rich repeat 470 530 IPR001611 GO:0005515
Trre14g00972 1045 Pfam Leucine rich repeat 592 650 IPR001611 GO:0005515
Trre14g00972 1045 ProSiteProfiles Leucine-rich repeat profile. 495 518 IPR001611 GO:0005515
Trre14g00972 1045 Gene3D Ribonuclease Inhibitor 37 218 IPR032675 -
Trre14g00972 1045 FunFam Leucine-rich repeat receptor protein kinase MSP1 733 848 - -
Trre14g00972 1045 Pfam Leucine Rich Repeat 132 154 IPR001611 GO:0005515
Trre14g00972 1045 SMART LRR_sd22_2 589 618 - -
Trre14g00972 1045 SMART LRR_sd22_2 541 573 - -
Trre14g00972 1045 SMART LRR_sd22_2 325 351 - -
Trre14g00972 1045 SMART LRR_sd22_2 229 261 - -
Trre14g00972 1045 SMART LRR_sd22_2 203 228 - -
Trre14g00972 1045 SMART LRR_sd22_2 130 156 - -
Trre14g00972 1045 SMART LRR_sd22_2 493 519 - -
Trre14g00972 1045 Pfam Leucine rich repeat N-terminal domain 41 78 IPR013210 -
Trre14g00972 1045 Pfam Protein kinase domain 770 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g00972 1045 ProSitePatterns Protein kinases ATP-binding region signature. 774 797 IPR017441 GO:0005524
Trre14g00972 1045 FunFam MDIS1-interacting receptor like kinase 2 849 1045 - -
Trre14g00972 1045 ProSitePatterns Tyrosine protein kinases specific active-site signature. 894 906 IPR008266 GO:0004672|GO:0006468
Trre14g00972 1045 Gene3D Ribonuclease Inhibitor 372 692 IPR032675 -
Trre14g00972 1045 SUPERFAMILY Protein kinase-like (PK-like) 748 1042 IPR011009 -
Trre14g00972 1045 SMART LRR_typ_2 203 229 IPR003591 -
Trre14g00972 1045 SMART LRR_typ_2 154 178 IPR003591 -
Trre14g00972 1045 SMART LRR_typ_2 106 129 IPR003591 -
Trre14g00972 1045 SMART LRR_typ_2 301 325 IPR003591 -
Trre14g00972 1045 SMART LRR_typ_2 613 636 IPR003591 -
Trre14g00972 1045 SMART LRR_typ_2 130 153 IPR003591 -
Trre14g00972 1045 SMART LRR_typ_2 253 277 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00972 Trre-Chr14 8261051 8264301 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00972 25 942 Receptor kinase-like Gene Family AT4G08850 42.088 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre14g00972 Pkinase 1.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00972 - - tpra:123888271 1194.49