Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00968 ATGAACCTAAGATACGAACAGAGACTTCAAGTCGCTGCTAAAATAATACTCGATGACGATGCAAGTTCCTATGACGCGCCGCAGAGTGAAGAAGAGCTTGGGATTAGGGCAACACTCAAGCCTCACCAAGTTGAAGGGGTTTCGTGGCTCATTCGGAGGTATAAACTCGGCGTTAACGTTGTTCTCGGTGAGATATTATTAACCTTTCAATTTTCGTTTCTGGTTGATCAGAATAATTATGTTATTGATTTTTGTTTTAGTATGGGATTGGGCAAGACACTGCAAGCTATCTCATTTTTAAGCTATTTGAAAGTGCGCCAGTTGTCACATGGGCCATTTTTGGTTATATGTCCTTTAAGTGTGACAGATGGTTGGGTATCTGAGATAGTCAAATATGCCCCTAAACTAGAAGTCTTTAAATATGTTGGTGATAAAGAATATAGGCGCAGTCTACGTATGAAAACACATGAACATGTAACAAGGCAGCCAACACATAATGACATTTTGCCTTTTGATGTGCTGTTAACATCATATGACATTGCACTGATGGATACGGATTTTCTTTCTCAAATACCATGGGAGTATGCAATCATCGATGAAGCCCAAAGGCTTAAAAACCCATCAAGTGTTTTATTTAATGTTCTCAAAGATCGCTATATCATGCCAAGACGGTTGTTGATGACGGGCACACCTATTCAGAACAACCTTTCTGAACTGTGGGCGTTGATGTATTTTTGCATGCCATCTGTCTTTGGGACACTAGATCAGTTCCTTTCTACATTCAAGGATATCAGTGATCTTACCTCAGTTCATGATTCTCCAAAGATAAAGGAGCGACTTCAAATCCTGAGAAGTGTATTGACTGCTTTTATGCTACGACGAACCAAATCAAAGCTTATGGAGTCTGGAAGTTTAGTGCTGCCACCTCTCACTGAGACAACAGTGTTAGTACCCCTTGTCAGCCTGCAAAAAAAGGTCTACATGTCGATACTGAGGAAAGAACTTCCGAAGCTAGTTGCACTCTCTTCTGGAACATCAAATCACCAATCATTACAGAATACTGTATTACAACTAAGAAAAGCATGCAGCCATCCTTATCTCTTTCCGGGTATTGAACCCGAACCTTATGAAGAAGGTGAACATCTGGTTCAGGCCAGTGGTAAGCTATTGATTCTGGACCAACTTCTTAGAAAGCTACATCATTATGGACATCGTGTTCTTCTTTTTGCTCAGATGACACATACACTTGACATTTTGCAGGATTTTCTGGAGTTACGTAAGTATTCTTACGAGCGTCTTGATGGATCAATTAGGGCTGAGGAGCGCTTTGCTGCAATAAGAAGTTTCAGCAACTCATCAGCTAATATGGGCTTGAATTTTGAAGCTGAACAAAATGGAGCTTTTGTTTTTATGATCTCAACAAGAGCTGGGGGAGTTGGCTTGAATCTTGTGGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAACCCGCAGGTGGACAGACAAGCTTTGCAGAGAGCACATAGAATTGGCCAGATGAATCATGTTTTGTGTATAAACCTTGTTACTGAACATACAGTGGAGGAAGTAATTATGCGGAGGGCAGAAAGAAAATTGCAGCTGAGCCTCAATGTTACAGGTGATAATATTCTGGAACATGAAGATAAAAATTTATCTGAAGTTGGAACTAGTGATTTGAAATCCATCATAGTTGGGTTGCGTATGTTTGATCCCAATGAGATCAATGATGGAAAAGACAAGGAAATGGACTTAACAGAAATTAATGCAATGGCTGACAAGGTGATTGCTATTCGTGATGAACAAATATTTGATAAGGACGACAGGAAATTTGAGGTCAATCCAAGAAACTTTTTAAAAGGATATGATGTTAAGGAAAGAGGTTCTGCTTCTCTCTCTTGTGATCTTGATCTTGATGAGGCTTCTTATCTCTCTTGGGTTAAAAAATTTGAGGAAGTTTCTAAATCAAGTTGTGACTCAATCATTGACTTGAGAAGCAGTAGGAACTTAGATGAGGAAAAGAGTAAAAAACTTGAGATTGCAAAGAAGAAGGCAGAAGAAAAGAAGCTGTCTAAGTGGAATGCTGTTGGATACCATTCATTGAATGTGAAAGAACCTAATAGCCCACCAGATGACGTCGTCATATTAGATGCTGGTTCTGTTCATTTTGTGTATGGAGATTGTACAGCTCCCTCAAATGTTTCTTCATCTGAACCGGCTATAATCTTCAGCTGTGTTGACACCTCTGGACGTTGGGGCCATGGTGGAATGTTTGATGCACTAACTAAACTTTCATCAAGCATCAATGAAGCATACGAACGGGCTTCTGAACACGGGGATCTGCATCTTGGTGATCTCCATCTTATAAGGCTTGAAGATGGCTGTGATGATCAAAATTTGGATGGTAATGCTCCCAAAATGGTTGCTTTAGCTGTGGTTCAATCTTACAATCCAAGGCGTAAAGTCCCTCGAAGTGAAATCTCACTTGTCCACTTGGAAAGCTGCTTATCAAAAGCAGCGTTCTCAGCCGCTCAAAATTCTGCATCAATACACATGCCACGGATTGGTTATCAAGATGGATATGATCGTTCTCAATGGTACACCATAGAACGGCTTCTAAGAAAATATGCCTCCATGTACAACATAAGTATATACGTGTATTATTATCGAAAATCACGTTAA 2703 0.4003 MNLRYEQRLQVAAKIILDDDASSYDAPQSEEELGIRATLKPHQVEGVSWLIRRYKLGVNVVLGEILLTFQFSFLVDQNNYVIDFCFSMGLGKTLQAISFLSYLKVRQLSHGPFLVICPLSVTDGWVSEIVKYAPKLEVFKYVGDKEYRRSLRMKTHEHVTRQPTHNDILPFDVLLTSYDIALMDTDFLSQIPWEYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLTSVHDSPKIKERLQILRSVLTAFMLRRTKSKLMESGSLVLPPLTETTVLVPLVSLQKKVYMSILRKELPKLVALSSGTSNHQSLQNTVLQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLRKLHHYGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEERFAAIRSFSNSSANMGLNFEAEQNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDRQALQRAHRIGQMNHVLCINLVTEHTVEEVIMRRAERKLQLSLNVTGDNILEHEDKNLSEVGTSDLKSIIVGLRMFDPNEINDGKDKEMDLTEINAMADKVIAIRDEQIFDKDDRKFEVNPRNFLKGYDVKERGSASLSCDLDLDEASYLSWVKKFEEVSKSSCDSIIDLRSSRNLDEEKSKKLEIAKKKAEEKKLSKWNAVGYHSLNVKEPNSPPDDVVILDAGSVHFVYGDCTAPSNVSSSEPAIIFSCVDTSGRWGHGGMFDALTKLSSSINEAYERASEHGDLHLGDLHLIRLEDGCDDQNLDGNAPKMVALAVVQSYNPRRKVPRSEISLVHLESCLSKAAFSAAQNSASIHMPRIGYQDGYDRSQWYTIERLLRKYASMYNISIYVYYYRKSR 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00968 900 SMART ultradead3 35 257 IPR014001 -
Trre14g00968 900 Gene3D Leucine Aminopeptidase, subunit E, domain 1 727 900 IPR043472 -
Trre14g00968 900 Pfam Helicase conserved C-terminal domain 388 512 IPR001650 -
Trre14g00968 900 SUPERFAMILY Macro domain-like 728 895 IPR043472 -
Trre14g00968 900 Gene3D - 306 615 IPR027417 -
Trre14g00968 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 294 IPR027417 -
Trre14g00968 900 CDD SF2_C_SNF 380 523 - -
Trre14g00968 900 Gene3D - 12 305 IPR038718 -
Trre14g00968 900 SMART helicmild6 417 512 IPR001650 -
Trre14g00968 900 CDD Macro_Poa1p-like_SNF2 727 885 - -
Trre14g00968 900 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 391 559 IPR001650 -
Trre14g00968 900 FunFam Putative helicase CHR10 305 616 - -
Trre14g00968 900 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 73 249 IPR014001 -
Trre14g00968 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 302 562 IPR027417 -
Trre14g00968 900 Coils Coil 675 695 - -
Trre14g00968 900 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 29 620 IPR031053 GO:0003678|GO:0006281|GO:0006338
Trre14g00968 900 Pfam SNF2-related domain 42 367 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00968 Trre-Chr14 8232827 8249023 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00968 88 572 RAD5 or RAD16-like Gene Family AT1G02670 24.522 8.72e-25 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre14g00968 SNF2_N 1.5e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00968 K20092 - gmx:100797182 1352.42