Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00967 ATGAACCTAAGATACGAACAGAGACTTCAAGTCGCTGCTAAAATAATACTCGATGACGATGCAAGTTCCTATGACGCGCCGCAGAGTGAAGAAGAGCTTGGGATTAGGGCAACACTCAAGCCTCACCAAGTTGAAGGGGTTTCGTGGCTCATTCGGAGGTATAAACTCGGCGTTAACGTTGTTCTCGGTGAGATATTATTAACCTTTCAATTTTCGTTTCTGGTTGATCAGAATAATTATGTTATTGATTTTTGTTTTAGTATGGGATTGGGCAAGACACTGCAAGCTATCTCATTTTTAAGCTATTTGAAAGTGCGCCAGTTGTCACATGGGCCATTTTTGGTTATATGTCCTTTAAGTGTGACAGATGGTTGGGTATCTGAGATAGTCAAATATGCCCCTAAACTAGAAGTCTTTAAATATGTTGGTGATAAAGAATATAGGCGCAGTCTACGTATGAAAACACATGAACATGTAACAAGGCAGCCAACACATAATCAGGACATTTTGCCTTTTGATGTGCTGTTAACATCATATGACATTGCACTGATGGATACGGATTTTCTTTCTCAAATACCATGGGAGTATGCAATCATCGATGAAGCCCAAAGGCTTAAAAACCCATCAAGTGTTTTATTTAATGTTCTCAAAGATCGCTATATCATGCCAAGACGGTTGTTGATGACGGGCACACCTATTCAGAACAACCTTTCTGAACTGTGGGCGTTGATGTATTTTTGCATGCCATCTGTCTTTGGGACACTAGATCAGTTCCTTTCTACATTCAAGGATATCAGTGATCTTACCTCAGTTCATGATTCTCCAAAGATAAAGGAGCGACTTCAAATCCTGAGAAGTGTATTGACTGCTTTTATGCTACGACGAACCAAATCAAAGCTTATGGAGTCTGGAAGTTTAGTGCTGCCACCTCTCACTGAGACAACAGTGTTAGTACCCCTTGTCAGCCTGCAAAAAAAGGTCTACATGTCGATACTGAGGAAAGAACTTCCGAAGCTAGTTGCACTCTCTTCTGGAACATCAAATCACCAATCATTACAGAATACTGTATTACAACTAAGAAAAGCATGCAGCCATCCTTATCTCTTTCCGGGTATTGAACCCGAACCTTATGAAGAAGGTGAACATCTGGTTCAGGCCAGTGGTAAGCTATTGATTCTGGACCAACTTCTTAGAAAGCTACATCATTATGGACATCGTGTTCTTCTTTTTGCTCAGATGACACATACACTTGACATTTTGCAGGATTTTCTGGAGTTACGTAAGTATTCTTACGAGCGTCTTGATGGATCAATTAGGGCTGAGGAGCGCTTTGCTGCAATAAGAAGTTTCAGCAACTCATCAGCTAATATGGGCTTGAATTTTGAAGCTGAACAAAATGGAGCTTTTGTTTTTATGATCTCAACAAGAGCTGGGGGAGTTGGCTTGAATCTTGTGGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAACCCGCAGGTGGACAGACAAGCTTTGCAGAGAGCACATAGAATTGGCCAGATGAATCATGTTTTGTGTATAAACCTTGTTACTGAACATACAGTGGAGGAAGTAATTATGCGGAGGGCAGAAAGAAAATTGCAGCTGAGCCTCAATGTTACAGGTGATAATATTCTGGAACATGAAGATAAAAATTTATCTGAAGTTGGAACTAGTGATTTGAAATCCATCATAGTTGGGTTGCGTATGTTTGATCCCAATGAGATCAATGATGGAAAAGACAAGGAAATGGACTTAACAGAAATTAATGCAATGGCTGACAAGGTGATTGCTATTCGTGATGAACAAATATTTGATAAGGACGACAGGAAATTTGAGGTCAATCCAAGAAACTTTTTAAAAGGATATGATGTTAAGGAAAGAGGTTCTGCTTCTCTCTCTTGTGATCTTGATCTTGATGAGGCTTCTTATCTCTCTTGGGTTAAAAAATTTGAGGAAGTTTCTAAATCAAGTTGTGACTCAATCATTGACTTGAGAAGCAGTAGGAACTTAGATGAGGAAAAGAGTAAAAAACTTGAGATTGCAAAGAAGAAGGCAGAAGAAAAGAAGCTGTCTAAGTGGAATGCTGTTGGATACCATTCATTGAATGTGAAAGAACCTAATAGCCCACCAGATGACGTCGTCATATTAGATGCTGGTTCTGTTCATTTTGTGTATGGAGATTGTACAGCTCCCTCAAATGTTTCTTCATCTGAACCGGCTATAATCTTCAGCTGTGTTGACACCTCTGGACGTTGGGGCCATGGTGGAATGTTTGATGCACTAACTAAACTTTCATCAAGCATCAATGAAGCATACGAACGGGCTTCTGAACACGGGGATCTGCATCTTGGTGATCTCCATCTTATAAGGCTTGAAGATGGCTGTGATGATCAAAATTTGGATGGTAATGCTCCCAAAATGGTTGCTTTAGCTGTGGTTCAATCTTACAATCCAAGGCGTAAAGTCCCTCGAAGTGAAATCTCACTTGTCCACTTGGAAAGCTGCTTATCAAAAGCAGCGTTCTCAGCCGCTCAAAATTCTGCATCAATACACATGCCACGGATTGGTTATCAAGATGGATATGATCGTTCTCAATGGTACACCATAGAACGGCTTCTAAGAAAATATGCCTCCATGTACAACATAAGTATATACGTGTATTATTATCGAAAATCACGTTAA 2706 0.4006 MNLRYEQRLQVAAKIILDDDASSYDAPQSEEELGIRATLKPHQVEGVSWLIRRYKLGVNVVLGEILLTFQFSFLVDQNNYVIDFCFSMGLGKTLQAISFLSYLKVRQLSHGPFLVICPLSVTDGWVSEIVKYAPKLEVFKYVGDKEYRRSLRMKTHEHVTRQPTHNQDILPFDVLLTSYDIALMDTDFLSQIPWEYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLTSVHDSPKIKERLQILRSVLTAFMLRRTKSKLMESGSLVLPPLTETTVLVPLVSLQKKVYMSILRKELPKLVALSSGTSNHQSLQNTVLQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLRKLHHYGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEERFAAIRSFSNSSANMGLNFEAEQNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDRQALQRAHRIGQMNHVLCINLVTEHTVEEVIMRRAERKLQLSLNVTGDNILEHEDKNLSEVGTSDLKSIIVGLRMFDPNEINDGKDKEMDLTEINAMADKVIAIRDEQIFDKDDRKFEVNPRNFLKGYDVKERGSASLSCDLDLDEASYLSWVKKFEEVSKSSCDSIIDLRSSRNLDEEKSKKLEIAKKKAEEKKLSKWNAVGYHSLNVKEPNSPPDDVVILDAGSVHFVYGDCTAPSNVSSSEPAIIFSCVDTSGRWGHGGMFDALTKLSSSINEAYERASEHGDLHLGDLHLIRLEDGCDDQNLDGNAPKMVALAVVQSYNPRRKVPRSEISLVHLESCLSKAAFSAAQNSASIHMPRIGYQDGYDRSQWYTIERLLRKYASMYNISIYVYYYRKSR 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00967 901 FunFam Putative helicase CHR10 306 617 - -
Trre14g00967 901 Coils Coil 676 696 - -
Trre14g00967 901 SMART ultradead3 35 258 IPR014001 -
Trre14g00967 901 Gene3D Leucine Aminopeptidase, subunit E, domain 1 728 901 IPR043472 -
Trre14g00967 901 Pfam Helicase conserved C-terminal domain 389 513 IPR001650 -
Trre14g00967 901 CDD Macro_Poa1p-like_SNF2 728 886 - -
Trre14g00967 901 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 303 562 IPR027417 -
Trre14g00967 901 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 392 560 IPR001650 -
Trre14g00967 901 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 295 IPR027417 -
Trre14g00967 901 Pfam SNF2-related domain 42 368 IPR000330 GO:0005524|GO:0140658
Trre14g00967 901 CDD SF2_C_SNF 381 524 - -
Trre14g00967 901 Gene3D - 307 616 IPR027417 -
Trre14g00967 901 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 28 621 IPR031053 GO:0003678|GO:0006281|GO:0006338
Trre14g00967 901 SUPERFAMILY Macro domain-like 729 896 IPR043472 -
Trre14g00967 901 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 73 250 IPR014001 -
Trre14g00967 901 SMART helicmild6 418 513 IPR001650 -
Trre14g00967 901 Gene3D - 12 306 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00967 Trre-Chr14 8232827 8249023 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00967 88 573 RAD5 or RAD16-like Gene Family AT1G02670 23.973 1.06e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre14g00967 SNF2_N 2.5e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00967 K20092 - gmx:100797182 1352.42