Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00962 ATGGCACGTTCCAGGTCCACCGCGCAGCGCCTTCTATACGCACTCCGTTCCTCCACCACCACCACAACCACCACAGTCTCTCCATCTCCAGCAAGCTCCCTAATCGGCGGTTCTTTCCACCTCCGACACTTCTCAGCCGGGAACGTTGCCCGCGCAAAGGCAGCTACAATTGATAAGGATCCATGGTGGAAGGAATCGATGGAAATGACTCGTAACATCGGGATCTCGGCACATATTGATTCCGGTAAGACGACGTTGACGGAGCGGATACTTTTTTATACTGGTCGGATCCATGAGATTCATGAGGTAAGGGGAAAGGATGGCGTTGGTGCTAAGATGGATTCTATGGATTTGGAGAGAGAAAAGGGAATTACTATACAATCTGCTGCTACTTATTGCACTTGGAAAGATTATAAGATCAACATAATTGACACACCTGGTCATGTCGATTTCACCATTGAGGTTGAGAGGGCTTTACGTGTCCTTGATGGTGCCATTCTTGTTTTTTGTAGTGTTGGTGGGGTGCAAAGTCAGTCCATTACTGTTGATCGACAAATGAAAAGATATGAGGTTCCAAGACTTGCATTTATCAATAAGCTTGATCGAATGGGAGCAGATCCGTGGAAAGTTTTAAATCAGGCTAGATCTAAGCTTCGCCATCATAGTGCTGCGATTCAAGTTCCAATAGGTTTGGAAGATGATTTTAAAGGACTTATTGATCTTGTGAAGTTAAAGGCCTATTATTTTCATGGTCCAAATGGTGACAAAATTGATATTGAAGAAGTGCCTTCAGATATGGAAGCCTTGGTCGCAGAAAAAAGACATGAACTAATAGAAACTGTGTCAGAGGTTGATGATATACTTGCTGAAGCGTTTCTTAGTGATGAGACCATTTCCGATGCTGATCTTGAGGGAGCAATTCGTAGGGCTACCATGGCGCGGAAATTTATCCCGGTATTCATGGGTAGTGCTTTCAAAAACAAGGGGATACAGCCACTTCTGGATGGTGTACTTAGTTATTTGCCATGTCCAGTTGAAGTTAATAATTATGCTCTTGATCAATCTAACAATGAGGAGAAGGTTGAGCTGACTGGAAATCCTGATGGGCCCCTTGTAGCATTGGCGTTCAAATTGGAGGAAGGGAAGTTTGGTCAGTTAACATATTTAAGAATTTATGAGGGTGTCATTCGGAAGGGTGATTCTGTTATTAATGTTAACACTGGTAAGAAGACCAAGATTCCTCGATTGATTCGGATGCATTCTAATGAGATGGAGGACATTCAAGAGGCCCATGCTGGCCAAATAGTTGCTGTATTTGGTGTTGATTGTGCATCAGGAGATACTTTTACTGATGGGTCAGTTAAATACACAATGACTTCTATGAGTGTTCCCGAGCCCGTGATGTCGTTAGCTGTGCAGCCAGTCTCAAAAGATTCTGGAGGGCAATTTTCAAAAGCTTTGAACCGCTTCCAAAGAGAGGATCCTACTTTCCGTGTTGGCTTGGACCCAGAGAGTGGGCAGACAATCATTTCTGGAATGGGAGAACTGCACTTAGATATTTATGTTGAACGCATTAGGAGGGAGTACAAGGTTGATGCTTCAGTCGGAAAGCCACGTGTAAACTTCAGAGAAACTGTTACTCAACGTGCTGATTTTGATTATTTACATAAGAAGCAAAGCGGAGGGCAAGGACAATACGGACGGGTGATCGGGTATATTGAACCACTTCCTGCTGGGTCAGGAACTAAGTTTGAATTTGAAAACATGCTTGTTGGTCAAGCCGTTCCATCAAATTTTATCCCTGCAATTGAGAAAGGTTTTAAAGAAGCTGCCAACTCTGGTGCCTTAATTGGACATCCAGTAGAAAATCTCCGAGTTGTCTTGACAGATGGTGCTGCTCATGCTGTTGATTCCAGTGAACTTGCCTTTAAGATGGCTTCTATCTATGCTTTTAGACAGTGTTATGCAGCTTCCAGACCAGTTATATTAGAACCTGTTATGCTTGTTGAGCTCAAAGTACCAACAGAATTTCAGGGAGCTGTTGCTGGTGACCTCAACAAGAGAAAAGGTGTGATTGTTGGCAATGATCAGGATGGTGATGACTCTGTCATTACAGCTCATGTCCCTCTTAACAATATGTTTGGGTATTCTACATCTCTTCGTTCGATGACACAGGGAAAGGGTGAATTCACAATGGAATATAAAGAACATTCACCCGTTTCTCATGATGTACAGACCCAATTGATAAATGCATACAAGGGCAATAAGGCGGCAGATGAATGA 2283 0.4328 MARSRSTAQRLLYALRSSTTTTTTTVSPSPASSLIGGSFHLRHFSAGNVARAKAATIDKDPWWKESMEMTRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGKDGVGAKMDSMDLEREKGITIQSAATYCTWKDYKINIIDTPGHVDFTIEVERALRVLDGAILVFCSVGGVQSQSITVDRQMKRYEVPRLAFINKLDRMGADPWKVLNQARSKLRHHSAAIQVPIGLEDDFKGLIDLVKLKAYYFHGPNGDKIDIEEVPSDMEALVAEKRHELIETVSEVDDILAEAFLSDETISDADLEGAIRRATMARKFIPVFMGSAFKNKGIQPLLDGVLSYLPCPVEVNNYALDQSNNEEKVELTGNPDGPLVALAFKLEEGKFGQLTYLRIYEGVIRKGDSVINVNTGKKTKIPRLIRMHSNEMEDIQEAHAGQIVAVFGVDCASGDTFTDGSVKYTMTSMSVPEPVMSLAVQPVSKDSGGQFSKALNRFQREDPTFRVGLDPESGQTIISGMGELHLDIYVERIRREYKVDASVGKPRVNFRETVTQRADFDYLHKKQSGGQGQYGRVIGYIEPLPAGSGTKFEFENMLVGQAVPSNFIPAIEKGFKEAANSGALIGHPVENLRVVLTDGAAHAVDSSELAFKMASIYAFRQCYAASRPVILEPVMLVELKVPTEFQGAVAGDLNKRKGVIVGNDQDGDDSVITAHVPLNNMFGYSTSLRSMTQGKGEFTMEYKEHSPVSHDVQTQLINAYKGNKAADE 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00962 760 FunFam Elongation factor G 665 735 - -
Trre14g00962 760 Gene3D - 544 749 IPR014721 -
Trre14g00962 760 SMART EFG_IV_2 539 659 IPR005517 GO:0005525
Trre14g00962 760 Pfam Elongation factor Tu domain 2 384 450 IPR004161 GO:0005525
Trre14g00962 760 PRINTS GTP-binding elongation factor signature 141 151 IPR000795 GO:0003924|GO:0005525
Trre14g00962 760 PRINTS GTP-binding elongation factor signature 72 85 IPR000795 GO:0003924|GO:0005525
Trre14g00962 760 PRINTS GTP-binding elongation factor signature 121 129 IPR000795 GO:0003924|GO:0005525
Trre14g00962 760 PRINTS GTP-binding elongation factor signature 157 168 IPR000795 GO:0003924|GO:0005525
Trre14g00962 760 PRINTS GTP-binding elongation factor signature 193 202 IPR000795 GO:0003924|GO:0005525
Trre14g00962 760 SUPERFAMILY EF-G C-terminal domain-like 461 538 IPR035647 -
Trre14g00962 760 CDD mtEFG1_II_like 371 451 - -
Trre14g00962 760 SUPERFAMILY EF-G C-terminal domain-like 664 753 IPR035647 -
Trre14g00962 760 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 5 751 - -
Trre14g00962 760 Pfam Elongation Factor G, domain III 463 537 IPR041095 -
Trre14g00962 760 SUPERFAMILY Translation proteins 309 461 IPR009000 -
Trre14g00962 760 Hamap Elongation factor G [fusA]. 66 752 IPR004540 GO:0003746|GO:0005525|GO:0006414
Trre14g00962 760 Gene3D Elongation Factor G (Translational Gtpase), domain 3 470 543 - -
Trre14g00962 760 Gene3D - 63 348 IPR027417 -
Trre14g00962 760 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 114 129 IPR031157 -
Trre14g00962 760 Pfam Elongation factor G, domain IV 538 658 IPR005517 GO:0005525
Trre14g00962 760 FunFam Elongation factor G, mitochondrial 61 348 - -
Trre14g00962 760 FunFam Elongation factor G 467 543 - -
Trre14g00962 760 SMART EFG_C_a 661 748 IPR000640 -
Trre14g00962 760 FunFam Elongation factor G, mitochondrial 353 466 - -
Trre14g00962 760 CDD mtEFG1_C 664 741 IPR035649 -
Trre14g00962 760 CDD EFG_mtEFG1_IV 542 657 IPR005517 GO:0005525
Trre14g00962 760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 342 IPR027417 -
Trre14g00962 760 NCBIfam elongation factor G 66 753 IPR004540 GO:0003746|GO:0005525|GO:0006414
Trre14g00962 760 CDD EFG_III 464 539 IPR009022 -
Trre14g00962 760 Gene3D Translation factors 352 469 - -
Trre14g00962 760 Gene3D - 665 735 - -
Trre14g00962 760 FunFam Elongation factor G 544 680 - -
Trre14g00962 760 Pfam Elongation factor G C-terminus 662 747 IPR000640 -
Trre14g00962 760 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 68 345 IPR000795 GO:0003924|GO:0005525
Trre14g00962 760 SUPERFAMILY Ribosomal protein S5 domain 2-like 538 660 IPR020568 -
Trre14g00962 760 CDD EF-G 72 344 - -
Trre14g00962 760 NCBIfam small GTP-binding protein domain 70 242 IPR005225 GO:0005525
Trre14g00962 760 Pfam Elongation factor Tu GTP binding domain 70 342 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00962 Trre-Chr14 8164602 8178372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00962 386 546 Eukaryotic Initiation Factors Gene Family AT3G22980 23.596 9.73e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00962 K02355 - gmx:100783315 1361.67