Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00957 ATGAGTCAGTGTGTTCCTAGTTGGGATGTTGACGAAAATCCACCACCACTACCAAGATCTCTTTCTCTTCGTTCCAGCTCTAACTCAACTGCCAATCTTGATGTTCCCATGTTAGACTATGATGTTGCAGAACTTACATGGGAAAATGGACAAATTTCTATGCATGGCCTAGGGTTACCGAAAGTGCCGGTTAAACCACCTTCAACAACAGCAGCAACCAATCCCTCTAAGGAAACTTGGGAAAAGCCCGCTCGTACGAGTGGCACCTTGGAGTCCATAGTAAACCAAGCAACTAGCTTTCCACACCGCGGTAAATCACCTTTTCTCGTTGGTGGTGGTGTCTACGGGAATATGTTAGTTCCATGGCTTGACCCACATCGTGCTGCAGCCATCGCTGCGGCCACCAACGGCTTAACTGTTGATGCGTTGGTTCCCTGCTCCAATACCACGAAGGAGCAGAGAAGTCAGACAATGGATCCAATCCCTAGAGGAGGGATTGGATCATGCATGGTTGGTGGCCCTACACCTGTAGGGTCATGTAGCGCTGTTGTGGCCGCAACACATGAGGAAGGTGGACTCCTTACTGCGGCAAAGCGTGTAAGGGTGGCACATGTGGCGGGGAGCGGTAGGGATCAAAGTATGAGTAACAGTGCAACCTTTGGGAGACAAAGTCAACAAGTTACATTAGATACGTACGACATGGAATTTGGTAAGACTGGTTTCACTTCAACTTCAATAGCATCAATGGATAATACAAGCTCTGATGAAAAACAGTGCACAAGGACTACCACCGTAGATGATCATGACTCTGTTTGCCACAGTAGACCATCGAGGGATGATGCTGACGAGGATGAGAAAAAGAGAGAAAATAGAAAATCATCCGTGTCCACAAAAAGGAGTAGAGCTGCAGCTATTCACAACCAATCTGAAAGGAAAAGGAGGGATAAGATAAATCAAAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGACTGATAAAGCTTCAATGTTGGATGAAGTGATAGAATATCTAAAACAATTGCAAGCACAAGTGCACATAGTGAATAGATTCAACATGTCATCGATGATGATGCCGATGACCATGCAACAACAACTTCAAATGTCGATGATGAATCCAATGGGCATGGGTATGGGGATGGGTATGGCCGGGATGGGCATGGGTATGGGAATGCCGGGCATGGGAATGGATATGAACACCATGAATCGAGCTAACATTCCCGGAATGCCGCAGGTTCTCCACCCTTCTGCATTCATGCCTATGGCTTCATGGGATGTCGGAAGCAGTAGCGACCGACTTCAGGGACCTCCGCCGACTGGGATGGCTGACCCCCTCTCCACATTTTTTGGATGCCAATCACAGCCCATGACCATGGATGCTTATAGTAGGATTGCTGCCATGTATCAGCAGATGCAACAACAACAACCTCCAGGAGCACCAGGTTCAAAGAGTTGA 1482 0.473 MSQCVPSWDVDENPPPLPRSLSLRSSSNSTANLDVPMLDYDVAELTWENGQISMHGLGLPKVPVKPPSTTAATNPSKETWEKPARTSGTLESIVNQATSFPHRGKSPFLVGGGVYGNMLVPWLDPHRAAAIAAATNGLTVDALVPCSNTTKEQRSQTMDPIPRGGIGSCMVGGPTPVGSCSAVVAATHEEGGLLTAAKRVRVAHVAGSGRDQSMSNSATFGRQSQQVTLDTYDMEFGKTGFTSTSIASMDNTSSDEKQCTRTTTVDDHDSVCHSRPSRDDADEDEKKRENRKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVHIVNRFNMSSMMMPMTMQQQLQMSMMNPMGMGMGMGMAGMGMGMGMPGMGMDMNTMNRANIPGMPQVLHPSAFMPMASWDVGSSSDRLQGPPPTGMADPLSTFFGCQSQPMTMDAYSRIAAMYQQMQQQQPPGAPGSKS 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00957 493 FunFam transcription factor UNE10 isoform X1 296 361 - -
Trre14g00957 493 Gene3D - 296 360 IPR036638 GO:0046983
Trre14g00957 493 Coils Coil 307 327 - -
Trre14g00957 493 CDD bHLH_AtPIF_like 301 354 IPR047265 -
Trre14g00957 493 MobiDBLite consensus disorder prediction 242 259 - -
Trre14g00957 493 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 299 363 IPR036638 GO:0046983
Trre14g00957 493 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 301 350 IPR011598 GO:0046983
Trre14g00957 493 MobiDBLite consensus disorder prediction 242 316 - -
Trre14g00957 493 MobiDBLite consensus disorder prediction 260 296 - -
Trre14g00957 493 MobiDBLite consensus disorder prediction 67 86 - -
Trre14g00957 493 MobiDBLite consensus disorder prediction 61 86 - -
Trre14g00957 493 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 42 486 IPR031066 -
Trre14g00957 493 MobiDBLite consensus disorder prediction 1 28 - -
Trre14g00957 493 SMART finulus 307 356 IPR011598 GO:0046983
Trre14g00957 493 Pfam Helix-loop-helix DNA-binding domain 306 351 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00957 Trre-Chr14 8075128 8085496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00957 1 471 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 43.724 1.78e-97 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre14g00957 HLH 7.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00957 - - gmx:100798775 523.087