Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00949 ATGATATCGGCAGGAAGTCAGGTCATCTTTGCATCAGGAAAAGGCTGTGGTTCTTGTTATCAGTTGAAGTGCACTGGAAATTCTGCTTGCTCAGGCAACCCTATTATTGTAGTTATCACTGATTTTTGTCCTGAATGTGCTCATTATTTTGATTTGAGTGGTAAAGCTTTTGGTTCCATGGCTATTTCTGGTCAAGCTGACAAGCTACGCATTGCTGGAAAAGTTCCCGTTGAATATACAAGAGTTGCATGCAACTACCCTGGTGTGTCAATAACTTTTAGTGTAGACTCTGGATCTAATCAAAATTATTTTGCTACTGTAATTGAATATGAGGATGGGGATGGTGATCTAAAAACAGTTGAACTAAAAGAAGCTCTTCAATCAGCAAATTGGGAAACCATGCAACAATCATGGGGTGCTGTTTGGAAAATTGATAAAGGGGCACCATTGAGAGCACCATTTTCTATTAGGCTAACTACAATTGAGTCTGGCAAGGTATTTGTTGCCAATAATGTGATCCCTGCAGATTGGAAGCCTGGTCAAACTTATAGAGCAATTGGAAATTTCAACTAG 573 0.3944 MISAGSQVIFASGKGCGSCYQLKCTGNSACSGNPIIVVITDFCPECAHYFDLSGKAFGSMAISGQADKLRIAGKVPVEYTRVACNYPGVSITFSVDSGSNQNYFATVIEYEDGDGDLKTVELKEALQSANWETMQQSWGAVWKIDKGAPLRAPFSIRLTTIESGKVFVANNVIPADWKPGQTYRAIGNFN 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00949 190 Gene3D - 1 84 IPR036908 -
Trre14g00949 190 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 102 185 IPR007117 -
Trre14g00949 190 SMART dpbb_1 2 79 IPR007112 -
Trre14g00949 190 Pfam Lytic transglycolase 3 79 IPR009009 -
Trre14g00949 190 Pfam Expansin C-terminal domain 91 174 IPR007117 -
Trre14g00949 190 PANTHER EXPANSIN-B3 1 186 - -
Trre14g00949 190 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 89 IPR007112 -
Trre14g00949 190 PRINTS Expansin/Lol pI family signature 6 24 IPR007118 GO:0005576
Trre14g00949 190 PRINTS Expansin/Lol pI family signature 72 88 IPR007118 GO:0005576
Trre14g00949 190 PRINTS Expansin/Lol pI family signature 171 185 IPR007118 GO:0005576
Trre14g00949 190 PRINTS Expansin/Lol pI family signature 131 145 IPR007118 GO:0005576
Trre14g00949 190 Gene3D - 85 185 IPR036749 -
Trre14g00949 190 PRINTS Major pollen allergen Lol pI signature 61 76 IPR005795 GO:0005576|GO:0019953
Trre14g00949 190 PRINTS Major pollen allergen Lol pI signature 4 15 IPR005795 GO:0005576|GO:0019953
Trre14g00949 190 PRINTS Major pollen allergen Lol pI signature 24 34 IPR005795 GO:0005576|GO:0019953
Trre14g00949 190 PRINTS Major pollen allergen Lol pI signature 93 108 IPR005795 GO:0005576|GO:0019953
Trre14g00949 190 PRINTS Major pollen allergen Lol pI signature 109 124 IPR005795 GO:0005576|GO:0019953
Trre14g00949 190 PRINTS Major pollen allergen Lol pI signature 140 157 IPR005795 GO:0005576|GO:0019953
Trre14g00949 190 SUPERFAMILY Barwin-like endoglucanases 1 88 IPR036908 -
Trre14g00949 190 SUPERFAMILY PHL pollen allergen 91 184 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00949 Trre-Chr14 8007126 8008459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00949 1 189 Expansin Gene Family AT1G65680 57.292 3.82e-80 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00949 - - gmx:100805408 293.893