Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00947 ATGGACAAATATAAGTGCAAACTTTGCTATAGAAGCTTCAACAATGGAAGAGCATTGGGTGGTCACATGAGATCTCACATGATGAATCTTCTTGTTACGAAACCAGAAGAAGATTCATCACGTACGATTCAACTTAGTTTTGAAGCTGAATCAGCACCATCTTCATCGTCATCAGAAGATGGTGATGACGATGAAAAGGGTCTAAGCTATGGCCTTAGAGAAAATCCAAAGAGAAGCATTCGCCTCGTGGATCAAGACTTTTCTTTTCCACAAGTTGATACGAGTTCCGTGATTCTTCAAGATATTGAAAGTGAAACCGAATCATCCAAGAACAACCCAACTCGTAGAAGATCCAAAAGGGTATGGAAAATTCGTGGGTTTGATCAAAAGTATTACGGTGAATCTGCTATGAAGAAAGTTAAATTTTTTAATAAGACAATATCTTCTGTTGTTGAACATGAACCGGTTAGTTCGGTTTCTGATACAACAACCGAAGAAGATGTTGCATTTTGTCTTATGCAATTGTCGAGAGACAACTGGAATAGACAAAATGAACAATATGAAGAGCCAGAAGAAGACGAAGATGAAGAAGAACTAGATGATGACGAAGATGAAGACGTTGAAGCTGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGAAATCGAAAGATCTTTAGAAGATAGTGATGAATCTCAAGAGCTAATAAAAGTTAGCAAGAATAACAATAAAGTACGTAAAGGAAGGTACAAATGTGAAACATGTAATAAAGTATTCAAATCTTATCAAGCATTGGGTGGTCATAGAGCAAGTCACAAGAAGATTAAATTAAACATAACTGTCGAAGAATCGCAACAAGAATTCGAAGTTGTGGAAAAGAAAATTCACGAATGTCCGGTTTGTTTTCGAGTATTTAATTCGGGTCAAGCACTTGGTGGACACAAAAGAACACATGTTATTCATGGATCAACAACAACAGTTCCAATTTTTAGTTCAAAAAAAGTTGGAAAAAGTGTTATAGATCTTAATCTTCCTGCTCCAATTGATGATGATGAAGTTAGTCAAATTGAGAATTCTGCTGTTTCTGATGCAGAATTTGTCAAAACTCGTTAG 1143 0.3596 MDKYKCKLCYRSFNNGRALGGHMRSHMMNLLVTKPEEDSSRTIQLSFEAESAPSSSSSEDGDDDEKGLSYGLRENPKRSIRLVDQDFSFPQVDTSSVILQDIESETESSKNNPTRRRSKRVWKIRGFDQKYYGESAMKKVKFFNKTISSVVEHEPVSSVSDTTTEEDVAFCLMQLSRDNWNRQNEQYEEPEEDEDEEELDDDEDEDVEAEEEEEEEEEEEEEEEEEEEEDEIERSLEDSDESQELIKVSKNNNKVRKGRYKCETCNKVFKSYQALGGHRASHKKIKLNITVEESQQEFEVVEKKIHECPVCFRVFNSGQALGGHKRTHVIHGSTTTVPIFSSKKVGKSVIDLNLPAPIDDDEVSQIENSAVSDAEFVKTR 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00947 380 ProSitePatterns Zinc finger C2H2 type domain signature. 308 328 IPR013087 -
Trre14g00947 380 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Trre14g00947 380 SUPERFAMILY beta-beta-alpha zinc fingers 259 328 IPR036236 -
Trre14g00947 380 MobiDBLite consensus disorder prediction 181 249 - -
Trre14g00947 380 MobiDBLite consensus disorder prediction 47 71 - -
Trre14g00947 380 ProSitePatterns Zinc finger C2H2 type domain signature. 262 282 IPR013087 -
Trre14g00947 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 306 328 IPR013087 -
Trre14g00947 380 Coils Coil 192 242 - -
Trre14g00947 380 SUPERFAMILY beta-beta-alpha zinc fingers 3 28 IPR036236 -
Trre14g00947 380 Gene3D Classic Zinc Finger 257 328 - -
Trre14g00947 380 SMART c2h2final6 306 328 IPR013087 -
Trre14g00947 380 SMART c2h2final6 260 282 IPR013087 -
Trre14g00947 380 SMART c2h2final6 4 26 IPR013087 -
Trre14g00947 380 Pfam C2H2-type zinc finger 259 284 - -
Trre14g00947 380 Pfam C2H2-type zinc finger 306 328 - -
Trre14g00947 380 Pfam C2H2-type zinc finger 4 27 - -
Trre14g00947 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 260 287 IPR013087 -
Trre14g00947 380 MobiDBLite consensus disorder prediction 187 238 - -
Trre14g00947 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 26 IPR013087 -
Trre14g00947 380 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 379 IPR044303 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00947 Trre-Chr14 7985328 7986470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00947 1 366 C2H2 Transcription Factor Family AT2G45120 41.146 4.56e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre14g00947 zf-C2H2_6 6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00947 - - tpra:123890030 602.823