Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00872 ATGGAACCCCAACCACAGAAGATTTCAGGAGGAGCAGAAATACTTAAACATATGGCTCCCGGATCGTCGGTTTCTATTGCATATCACCCCAATTTTGGACCTCATGATGACCTTATCATTTTAGAGCTGGATGAGAAACTGGTCCCAGATGTTTTGAATGAAAGGATGGTCTTAAGAGGACAGCCTGATGAAGATGCAGTTCTGTGTACTCAATCAAAAACATATGCTATGAAGTTTGTTGGAACTTCGAATTCTGTTTTGCTTGTACCACCAGCAAATCTATCAGATGAAAATTTACAGGCAAATGATAGTAATAATAGTGATGAGAAAGTTGTTGCAAATGTAATAAAAGTTGTACCTGGTAATATGGAGCTTATCGAGGTTTCACCCAGACTTGATAAACTTAGATTGCTTCTTTCGGAGAACACTTACAGATTTGATGAGAATGACATGGAAACTTTAGAAGATAATCAGGAATCTAAAACAGGATTATATAGCTGGAATGATCTTATAGATAATATCCAAGCTAGTGACGAGGAATTAAGGCTTGGATTGCAGGCTCTTTCCGCTGTGGAGATTAATGGGTATTGGAGATTAGTTGATGAGAGTTACATGGACATGATTTTGGGAATGCTTTTGAAAAATGCAGTGTTGAATGATTGGTCACTCAATGCTCTAAATGAAGATGAAGTCGTGAATATGCTAGAATCAGACGGATTTCCGTTGGTACTTGCAAGGCATTGCTTGCATGTATATGGCAAGCAAGTAAAAGAAAATGATTGCATGGAAAGCTGTGTGTGGAAGTTGGATGAAAAGCGGGTATGCATACACTTTGCAAGAGAAATCCTGAAAGGAGGTAAGAGGAAGTTAGAGAGTTTTATGGATGAATGGAGGAACAAGACTCCAGATGAAATGCATCCTACTTTTGATCTTATGGAAGGAGAGGTATTGACAGAGAAAATTGGAGTTGAGACATGGGTCCGTGCTTTCCGCGTGTCTTCTTTGCCTTCCACTCCAGCTGAACGTTTCTCCATTCTTTTCAGAGAGCGTGCAAAATGGGATTGGAAAGATCTGCAGCCCTATATCAGGGATCTGAATGTACCTGGTCTTTCTGCAGAAGGTATACTACTCAAATACACTCGAAAGACGCAACCATCACCTAATCAAGATCCAGTTTTCAGTGCAAGATAG 1191 0.3988 MEPQPQKISGGAEILKHMAPGSSVSIAYHPNFGPHDDLIILELDEKLVPDVLNERMVLRGQPDEDAVLCTQSKTYAMKFVGTSNSVLLVPPANLSDENLQANDSNNSDEKVVANVIKVVPGNMELIEVSPRLDKLRLLLSENTYRFDENDMETLEDNQESKTGLYSWNDLIDNIQASDEELRLGLQALSAVEINGYWRLVDESYMDMILGMLLKNAVLNDWSLNALNEDEVVNMLESDGFPLVLARHCLHVYGKQVKENDCMESCVWKLDEKRVCIHFAREILKGGKRKLESFMDEWRNKTPDEMHPTFDLMEGEVLTEKIGVETWVRAFRVSSLPSTPAERFSILFRERAKWDWKDLQPYIRDLNVPGLSAEGILLKYTRKTQPSPNQDPVFSAR 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00872 396 Pfam Sister chromatid cohesion protein Dcc1 40 362 IPR019128 GO:0007064|GO:0031390
Trre14g00872 396 PANTHER SISTER CHROMATID COHESION PROTEIN DCC1-RELATED 9 396 IPR019128 GO:0007064|GO:0031390
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00872 Trre-Chr14 7393123 7395653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00872 10 396 C3H Transcription Factor Family AT2G44580 55.725 3.17e-159 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00872 K11271 - gmx:100817511 640.958