Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00868 ATGGGAGTTCACGGTCTCTGGGAACTACTTTCCCCCGTCGGTCGCCGTGTCAACGTCGAAACCCTCGCCGGAAAAACACTCGCCGTCGACGCGAGCATATGGATGGTACAGTTTATCAAAGCGATGCGTGATGAAAAAGGTGAAATGGTTAGCAACGCTCATTTGCTTGGATTCTTCCGTCGCATTTGTAAGCTCTTGTTTCTGAGAACCAAACCTGTTTTTGTCTTTGACGGTGGAACCCCTGCCTTGAAGAGGCGTACCGTTATTGCTCGCCGGAGACAGCGCGAAAATGCTCAGGCTAAAGTTCGCAAGACTGCCGAGAAATTGCTTCTTAATCACGTAAAGACATTGAGGTTAAAGGAACTGGCTGATGATATTAAGAACCAGAGACTGACCCAGAAGAGTGGCACAAAGTCTTGGGAAAAATCTAATCAGGTGGACTTCGTTGGTAGTGATTTAGGAAGAAGTCACACGTCTGCAGCTATACCTGTGGCTAAGGAGGACAAAAATCTATCACAGACTATAACATCGACAAGTTGCAGTCAAGAAGAGCTTGATGAAATGCTGGCAGCATCTATAGCTGCAGAGGAAAATGGAATCCGATCAAGAGAAGCAGTGGCATCTAATGTAATCGATTCTTCAGATGCAGGCGAAGAGACGCTACTGCCATCAGACAATGCGGAAGTTGATATAGCTGTTTTAGCTGCTTTGCCACACTCAATGCAACGTGATATTCTTGCGCAGCTTAAAGGGAAGAAAGCAGAAGGACTAAAGAAGCAAGTTGACAACCAGATAAGACATGATGTCAGTGATTGTGGCAAGGGTAAAGACACTATTTTCCATGACACTGATATGATTGGGTGTAGCTCAAGATGTGACGTCAATGTGACATTAAGTAATGACAATCAAAACAGAATTGATGAAATGTTAGCCGCATGTATTAATATGGAGGAAAATGCAAAGTTAGTAAAAAATGTATCAAGTTCAAGTACTCTTGGGGATTCCACCAATAAGGAAAAGGATAGTAACTATGATGAAGATGAAGAGATGATACTGCCAGCTATGCACAGTGAAGTTGATCCAGCTGTTCTGGCCTCTCTGCCTCCATCAATGCAACTGGACCTCCTTGTTCAGATGAGAGAGCGATTGATGGCAGAGAACAGACAAAAGTATCAAAAAGTCAAGAAGGATCCTTCAAAGTTCTCTGAGCTACAAATACAAGCTTACCTTAAAACTGTTGCTTTCCGTCGTGAAATAAATGAAGTGCAGAAAGCTGCTGTCGGAGGAGGAGTAGGTGGTTTACAGACTTCACGGATTGCATCTGAAGCCAACCGAGAGTATATATTCTCATCATCCTTCTCCGGTGACAAACAAGAACTTACTTCCACCAGATCAGAGAAAAATGTCGAAGATACACAGCAAATAGAACGGGGAACACATCCTTCGCCAAATATTGTAAATAACGTAGCAGCAGTAAATGTTTCTAATACTTCAGCTGGATTGGTTTGCAATGAATCAAGTGAGCCTGTTGATGAAAGTATTCAGACATTTCTAGATGAGAGGGGTCGATTTCGAGTGAGTAGATCAAGAGCTATGGGGATGCGTATGACCCGTGATATACAAAGGAATTTGGATTTGATGAAGGAGATCGAGCATGACAGAACATGCGTGAACAAGGCTGATAACATTGAAACAGGGCTGAATACTGAAAATAGTCCACTAGAATGTTCTGGGAATCAGGTTAGTGGTAAAGCACAAGAGGTGGATTTTGACTTAGTTGGAGAGAATGTGCAAAATGAGAACTTAATGATTGGCAAGGATACTTCTATAGAGATATCCTTTGAATATGATTGCAAGAATGAATTTGCAAGTGGTGGGGATGATATATTTGCCAGTTTAGTAGGAGGAATATCTATGGATCACTCTCATGCTGATGATACTGTGGTGAAAGTGCAACCTTCTGGTTCTGATTCTGATTGTGATTGGGAAGAAGGAACTGTTCAGGGTGAGAATACCATTTTTCCTGGATATAATAAACTGGAATTGAAGTCTTCTGTTGCAGGTGGCTATGATGGTGATGATAATAATAATGAAAGTGAAGAAGAATGGGAAGAAGGGGATTGTAATGCTACTAAAAGTACCTTATTGAGTCCAACTGAGTCGGAAAAGTTGGCATCAAAAGGGAAACTGGAAGAGGAGTCTGATTTGCAGGAGGCAATTAGGAGAAGTCTTGAGAGTACACAGGATGGGAAACAAAAATCCTTGTCATCTTTAGACAAGCATTCAAGTGCTTATGAGAATAAGCTAGATCCTAATTTAGGACATGGTGATAATGTTGGTTTTGGCCCAAACCCAGTGAATTTAAATGATAATAGGGAGGGTTCCAATTTTCCTAGGGAAGATCATACCAAACAAAATGAATTACATGAAACTGTAGGAAACAAAAAGGAAAATTATGTGACTAAAAATATCCCGGAAACTTTCCATTTCCACGGAAGTCCGTCAAATTCATTTGTGGCAATTAATTCCAATGACACAGCTACATTGGTTAACGAACCTAGCATGCTGGCTGGACACGATATTTCTGAAAATTCAATTTCAGATGCAACTGTCATGGTGATGCGTGAAGTTCCTAAACTTATTGTTGCAGAGGAATTATTGGATAATCATAATGATGGTAAAGCGTCTTTTGGTTGTAACAATTTGTCCAAGGTTGGTGTGACTGAAGAGGAGAAAAATAAATATATTAATGAAACTGAACCATTGAGTAATTCTACCGGCAATACAAATACTGCTATTCTTTCCATGGACTCATCCTTAAAAGGAGCTAAAGAAGACCTTGAAATGGAGCTAAAATTGCCTTCAGTTAACAGTGATGGAAATTTGTCTATGGAAAAGAGTAGTAACCTCTCCCAAGACTCAATGAATCCCCCAAGAGATTTTCCCGTACAATGGGATGAGGTTCGATTGAATGAAGAAATGAAAATTCTTGATCGGGAATATATCAACCTAGAAAATGAGCAGAGGAAGTTTGAGCGTAATGCAGAATCCGTTGATAGTGAATTATTCACTGAATGTCAGGAACTACTTCAAATGTTTGGCCTGCCATATATTATTGCTCCTATGGAAGCTGAGGCACAGTGTGCTTACTTGGAACTCTCAAAACTGGTTGATGGTGTTGTGACTGATGACTCTGATGTACTTTTATTTGGGGCACGCAGTGTTTACAAGAATATATTTGATGACCGCAAATACGTAGAGACATACTTCATGGAGGACATTGAAAAGGAGCTTGGATTGAACAGAGAAAAATTAATTCGCATGGCACTACTTCTTGGGAGTGACTATACTGAAGGTGTAAGCGGGATTGGCATTGTTAATGCTATTGAGGTTATAAGTGCATTCCCGGAGGAAGATGGCTTTGTGAAATTCCGGAAGTGGGTTGAGTCACCAGATCCCACCATCGTTGGAAGGTTGGATGCAAAAAAAGTATCTAAGAAAGGGTCAAAACTTCAAGAAAAGGAGTCTCCTGATTCCATCGACAAAGGAAAGCAAATTTTCATGAATAAGCATAGAAATGTTAGCAAGAATTGGCATATTCCTTCTTCTTTTCCAAGTGAAACAGTTATATCTGCTTACTTATCTCCACAAGTTGACAAGTCAACTGAGCCTTTCACATGGGGAAAGCCAGATCAGCTTGTTCTTCGCAAAATGTGCTGGGAGAAATTTGGATGGTCTAGCCAGAAAGCAGATGAATTGCTATTACCTGTTTTAAAGCAATACAACAAACGTGAGACTCAACTGCGGTTGGAGGCATTTTACAGTTTCAGTGAAAGATTTGCAAAAATTCGTAGCAAGAGAGTCAAGAAGGCAGTAAAAGGAATTACTGGTAAGCTGCCTTCAGATTTAATAGCTGATTCTGCGGAGAACATGTCCAAGGATATGAAAAATGGGAGCGGAAGTTCTGTTGACCCTGAGGATGACAAATTGGAGACTTCGAAGGGAACAGAGGAAAGTCTTGCAGGTAGGAAGAAATCAAAAGCAAAAGAGTCGACGAAAAGGAAAATTGACAGGGATACTGTTGCTAAGCAACATACAAAGAAAAAGAAAATCAATGATGTTTCTTCTTCTACACCCGCAGCATCCGAGGTTGAGAATTTACAGCAATGTATGCAAACAGAAGAAGGGCAACATGATGGTAAGGGATTGACTCGGAATAAAAGTGGCAGTGGGCGTGGTCGTGGAAGAGGTATAGGTGTAGGAGTAAAAAGAGGCAGGGCGAAGAGAACTCGTTTTCAATCATCTGAAACTGAAGCATCATCTGATAGTAGTGACATTGAGAATCATGAGTCAACACTTCCAGAGGTTGTGCGAAGGTCAATGCGGTCTCGGAAACCTGTCAACTATTCTTTCGAGGACCTTGAAGTTGAAGATGCAGATGATTCATTTGATCAGACCAATAAAACTGGCTTGCCTGGAGAGGTAGCAAAAGAAAAACCATCTTGCATGGATGATGCACATGTAGATGGTTTCAGCGGTGTGAATGAAAGTGGTATGATAGATATTCCTCTGAAGGATAACTTGCCCACAGACTATCTGGAGCCAGGAACAGATGCTGGTGCAGCAACACCAACGGCTCACCCTTCAGATGGCTATCTTGAAATGGGAGGAGGATTCTGTGTAGACGATAGTGAGATGGATAACAACCATGATGCAATTGATGACATGAACACGGCTACTGCAAACTCTCCACCCTGTTCTGAATTTTTGGGTGAAACTGACCGTGATAAAAGTAGTCCTGGTATATTTTCTGGTACTGAAAAGGCTACAAGTGAGATAGAAGATGGAGGGACATCTAAAATATTCAACAAAGTGCCAAATGACCAGCTTCTAAAGGCTGACATAGGGGTCTTGATACCAGAGAATGCTCACACTAGTGAGAGCTCCAAGGTAGCTTTTAGCGCTATGCCGTTTTTGAGGAAAAAAAGGAAGAAATGA 4998 0.4122 MGVHGLWELLSPVGRRVNVETLAGKTLAVDASIWMVQFIKAMRDEKGEMVSNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKVRKTAEKLLLNHVKTLRLKELADDIKNQRLTQKSGTKSWEKSNQVDFVGSDLGRSHTSAAIPVAKEDKNLSQTITSTSCSQEELDEMLAASIAAEENGIRSREAVASNVIDSSDAGEETLLPSDNAEVDIAVLAALPHSMQRDILAQLKGKKAEGLKKQVDNQIRHDVSDCGKGKDTIFHDTDMIGCSSRCDVNVTLSNDNQNRIDEMLAACINMEENAKLVKNVSSSSTLGDSTNKEKDSNYDEDEEMILPAMHSEVDPAVLASLPPSMQLDLLVQMRERLMAENRQKYQKVKKDPSKFSELQIQAYLKTVAFRREINEVQKAAVGGGVGGLQTSRIASEANREYIFSSSFSGDKQELTSTRSEKNVEDTQQIERGTHPSPNIVNNVAAVNVSNTSAGLVCNESSEPVDESIQTFLDERGRFRVSRSRAMGMRMTRDIQRNLDLMKEIEHDRTCVNKADNIETGLNTENSPLECSGNQVSGKAQEVDFDLVGENVQNENLMIGKDTSIEISFEYDCKNEFASGGDDIFASLVGGISMDHSHADDTVVKVQPSGSDSDCDWEEGTVQGENTIFPGYNKLELKSSVAGGYDGDDNNNESEEEWEEGDCNATKSTLLSPTESEKLASKGKLEEESDLQEAIRRSLESTQDGKQKSLSSLDKHSSAYENKLDPNLGHGDNVGFGPNPVNLNDNREGSNFPREDHTKQNELHETVGNKKENYVTKNIPETFHFHGSPSNSFVAINSNDTATLVNEPSMLAGHDISENSISDATVMVMREVPKLIVAEELLDNHNDGKASFGCNNLSKVGVTEEEKNKYINETEPLSNSTGNTNTAILSMDSSLKGAKEDLEMELKLPSVNSDGNLSMEKSSNLSQDSMNPPRDFPVQWDEVRLNEEMKILDREYINLENEQRKFERNAESVDSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELSKLVDGVVTDDSDVLLFGARSVYKNIFDDRKYVETYFMEDIEKELGLNREKLIRMALLLGSDYTEGVSGIGIVNAIEVISAFPEEDGFVKFRKWVESPDPTIVGRLDAKKVSKKGSKLQEKESPDSIDKGKQIFMNKHRNVSKNWHIPSSFPSETVISAYLSPQVDKSTEPFTWGKPDQLVLRKMCWEKFGWSSQKADELLLPVLKQYNKRETQLRLEAFYSFSERFAKIRSKRVKKAVKGITGKLPSDLIADSAENMSKDMKNGSGSSVDPEDDKLETSKGTEESLAGRKKSKAKESTKRKIDRDTVAKQHTKKKKINDVSSSTPAASEVENLQQCMQTEEGQHDGKGLTRNKSGSGRGRGRGIGVGVKRGRAKRTRFQSSETEASSDSSDIENHESTLPEVVRRSMRSRKPVNYSFEDLEVEDADDSFDQTNKTGLPGEVAKEKPSCMDDAHVDGFSGVNESGMIDIPLKDNLPTDYLEPGTDAGAATPTAHPSDGYLEMGGGFCVDDSEMDNNHDAIDDMNTATANSPPCSEFLGETDRDKSSPGIFSGTEKATSEIEDGGTSKIFNKVPNDQLLKADIGVLIPENAHTSESSKVAFSAMPFLRKKRKK 1665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00868 1665 Pfam Ubiquitin binding region 357 384 IPR025527 -
Trre14g00868 1665 Pfam Ubiquitin binding region 226 248 IPR025527 -
Trre14g00868 1665 FunFam DNA repair protein UVH3 981 1099 - -
Trre14g00868 1665 MobiDBLite consensus disorder prediction 1442 1459 - -
Trre14g00868 1665 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Trre14g00868 1665 ProSitePatterns XPG protein signature 2. 1034 1048 IPR019974 GO:0016788
Trre14g00868 1665 Gene3D - 1 148 - -
Trre14g00868 1665 MobiDBLite consensus disorder prediction 1373 1395 - -
Trre14g00868 1665 FunFam DNA repair protein UVH3 1100 1157 - -
Trre14g00868 1665 MobiDBLite consensus disorder prediction 724 748 - -
Trre14g00868 1665 MobiDBLite consensus disorder prediction 459 484 - -
Trre14g00868 1665 MobiDBLite consensus disorder prediction 1320 1372 - -
Trre14g00868 1665 Gene3D - 961 1099 - -
Trre14g00868 1665 Gene3D - 1100 1189 - -
Trre14g00868 1665 MobiDBLite consensus disorder prediction 1311 1459 - -
Trre14g00868 1665 MobiDBLite consensus disorder prediction 954 982 - -
Trre14g00868 1665 SMART xpgineu 1031 1100 IPR006086 GO:0004518
Trre14g00868 1665 CDD PIN_XPG_RAD2 2 92 - -
Trre14g00868 1665 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Trre14g00868 1665 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Trre14g00868 1665 FunFam DNA repair protein UVH3 1 146 - -
Trre14g00868 1665 MobiDBLite consensus disorder prediction 1573 1587 - -
Trre14g00868 1665 MobiDBLite consensus disorder prediction 1533 1620 - -
Trre14g00868 1665 CDD H3TH_XPG 1103 1220 - -
Trre14g00868 1665 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Trre14g00868 1665 SUPERFAMILY PIN domain-like 2 1115 IPR029060 -
Trre14g00868 1665 CDD PIN_XPG_RAD2 1017 1259 - -
Trre14g00868 1665 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 251 - -
Trre14g00868 1665 MobiDBLite consensus disorder prediction 460 474 - -
Trre14g00868 1665 Pfam XPG I-region 1034 1115 IPR006086 GO:0004518
Trre14g00868 1665 MobiDBLite consensus disorder prediction 325 344 - -
Trre14g00868 1665 Coils Coil 987 1021 - -
Trre14g00868 1665 MobiDBLite consensus disorder prediction 688 801 - -
Trre14g00868 1665 SMART HhH_4 1102 1135 IPR008918 GO:0003677|GO:0003824
Trre14g00868 1665 SMART xpgn3 1 98 IPR006085 GO:0004518
Trre14g00868 1665 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1100 1283 IPR036279 -
Trre14g00868 1665 MobiDBLite consensus disorder prediction 956 978 - -
Trre14g00868 1665 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Trre14g00868 1665 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Trre14g00868 1665 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Trre14g00868 1665 PRINTS Xeroderma pigmentosum group G protein signature 638 656 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00868 Trre-Chr14 7339489 7350487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00868 1010 1152 Core DNA Replication Machinery Family AT5G26680 31.288 2.45e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00868 K10846 - gmx:100820295 1977.22