Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00867 ATGCTTTCTCTTCAATTCACCATCCACCCTCTTCCTCCATCTCAACTCCTCACCACCAACATTTCTTCTTTATCTGCCACCTCACTCTCCTTCTTCAACCACCACCACCTTCTTCGCTACAATGTCAAAACCCTAAAAAACCACAGAATTCTCGCAATGTCTACCAATAATAATTCTGCATTCAAAATGAACCTCAACGAGTATCTCGTCACTCTCGAGAAACCACTCGGAATTCGATTCGCTCTTACATCCGATGGGAAAATCATTGTTCACTCTCTCGCTAAAGGGGGTAATGCGGAGAAGTCTAGGATAATTATGGTGGGTGATACTTTGAAGAAAGCTGGTGATTCGTCGCGGAATAGTCTTGTTGAGATTAAAGATGTTGGAGATACACAGAAGGTGCTAAAGGAGCAAACAAGTTCTTTTAGCTTGGTTCTTGAGAGGCCTGCATCTACATTTCCCATTCAACTACTGCATAATAAGATGAATGATCTTGAAATAGTGTATAATAGAGGCCGAGTTCCTGTTGTCACATGGAACAAGACACTATTAGCATCAAATTTACAACCATCTAGTGTGAGCTGTGGGAGTTCTGGATTTTCGACGTTCAACTCAAAGTTTCTTAATTCAAATGGAAGCAAGTTATTGGGCAATCAAAATCAACATGCCATCACCCATGGTGAAAGAAATTCATTTACTGAACAAACGATACAACTTGCTTGTGTTTTCTCCGAAGAAGAATCTGGAGATGGAGATTGGGCTCACGGAAGTTTTCCACTTGAAGAATATATTAAGGCTCTAGATCGTTCCAAGGATGAGATGTACTATAATCACTCTCTTGGTATGCGTTATAGTAAGATTACCGAGCAAATATATGTGGGATCTTGTATACAAACAGATGAAGATGTGGAAACCTTGTCAAAAGTTGAGGGAATTACTGCTGTTCTGAACTTCCAAAGTGGAACTGAAGCTGAAAATTGGGGAATCAATGTAAAATCAATCAATGACGCTTGTCAAAGGAATAATATTCTCATCATCAACTACCCGATACGGGATGGGGATTCTTATGACATGAGAAAAAAACTCCCATTTTGTGTTGGGCTTTTATTACGGTTGCTAAGAAAGAATCTCCGTGTTTTTGTTACTTGCACTTCTGGATTTGATCGGTCTCCTGCTTGTGTGATTGCATATCTACATTGGATGACAGACGTTTCCCTTCATGCAGCCTATACTTGGGTCACTGGGATGCACACATGCAGGCCTGACAGGCCGGCAATTGCATGGGCGACATGGGATCTTATAGCTATGGCTGAAAGGGGCGAACATGATGGTCCTCCCACACATGCTGTAACATTTGTATGGAATGGTCATGAGGGAGAGGATGTCAATTTGGTTGGAGACTTTACTGGAAATTGGAAAGAACCAGTTAAGGCAAAGCATCGGGGTGGATCAAGACATGAAGTAGAAGTTAAACTTCCACAAGGAAAGTATTACTACAAGTTCATTGTTAATGGACAATGGAAGCATTCAACATCTTCACCAGCTGAAAGGGATGATAGCGGAAATGTTAACAATATAATCATGATCGGTGAAACTGCAAGCGTTCGTCCTTCTGTTCAGCACCAGCAAAAAGATGCCAACGTTGTAAAGGTGATCGAAAGACCTTTGAATGAAAAAGAGCGGTTTATGTTGGCGAAAGCTGCTCGTTGTATTGCTTTCTCCATCTGTCCTGTCAGATTAGCTCCCAAATAG 1752 0.4132 MLSLQFTIHPLPPSQLLTTNISSLSATSLSFFNHHHLLRYNVKTLKNHRILAMSTNNNSAFKMNLNEYLVTLEKPLGIRFALTSDGKIIVHSLAKGGNAEKSRIIMVGDTLKKAGDSSRNSLVEIKDVGDTQKVLKEQTSSFSLVLERPASTFPIQLLHNKMNDLEIVYNRGRVPVVTWNKTLLASNLQPSSVSCGSSGFSTFNSKFLNSNGSKLLGNQNQHAITHGERNSFTEQTIQLACVFSEEESGDGDWAHGSFPLEEYIKALDRSKDEMYYNHSLGMRYSKITEQIYVGSCIQTDEDVETLSKVEGITAVLNFQSGTEAENWGINVKSINDACQRNNILIINYPIRDGDSYDMRKKLPFCVGLLLRLLRKNLRVFVTCTSGFDRSPACVIAYLHWMTDVSLHAAYTWVTGMHTCRPDRPAIAWATWDLIAMAERGEHDGPPTHAVTFVWNGHEGEDVNLVGDFTGNWKEPVKAKHRGGSRHEVEVKLPQGKYYYKFIVNGQWKHSTSSPAERDDSGNVNNIIMIGETASVRPSVQHQQKDANVVKVIERPLNEKERFMLAKAARCIAFSICPVRLAPK 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00867 583 CDD E_set_AMPKbeta_like_N 450 529 - -
Trre14g00867 583 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 273 416 IPR029021 -
Trre14g00867 583 SUPERFAMILY E set domains 447 530 IPR014756 -
Trre14g00867 583 FunFam Phosphoglucan phosphatase LSF1 chloroplastic 276 443 - -
Trre14g00867 583 Pfam Dual specificity phosphatase, catalytic domain 304 413 IPR000340 GO:0008138|GO:0016311
Trre14g00867 583 ProSiteProfiles PDZ domain profile. 69 150 IPR001478 GO:0005515
Trre14g00867 583 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 52 581 - -
Trre14g00867 583 SUPERFAMILY PDZ domain-like 71 157 IPR036034 GO:0005515
Trre14g00867 583 Pfam Glycogen recognition site of AMP-activated protein kinase 450 531 IPR032640 -
Trre14g00867 583 CDD DSP_laforin-like 282 428 IPR045204 GO:0019203
Trre14g00867 583 Gene3D Protein tyrosine phosphatase superfamily 276 542 IPR029021 -
Trre14g00867 583 ProSiteProfiles Dual specificity protein phosphatase domain profile. 283 442 IPR020422 GO:0006470|GO:0008138
Trre14g00867 583 Gene3D Immunoglobulins 437 533 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00867 Trre-Chr14 7324336 7333717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00867 134 583 Protein tyrosine phosphatase (PTP) family AT3G01510 68.222 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00867 - - mtr:25498007 1083.94