Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00860 ATGCCTCCAAAGAAGAAACTCAACACTTCATCATCTTCCAAAAAACCCAATCCACAACCTTCCAAATACGGTATTCAACACTTCTTCGATCGTCACGCAACTCAACAACAATCTCAGAAACTTCAATCCAACAATTCAACCTCTCAGGTTGTTGCTCCCGATTCTCTTCCACCGCCGGAAAAACCTAAAGATGCTGATGCTCCGTCGGGTGCATCTTTGCAGGGTGGTACACCTAATGATTCAGTGATACCGGCGGTCACTGATGATACAGATAACCTCTCTGAGGTGTCTCCGGAGATTTCTAAGTCTATGTCACGGAAGCGATTCAAATTCTCACCTGGAATGTTTATCAAGCAAAGTCAGGATGATGGGGCTGATGAGGTTACATGGAAGATATCTCCAGTGAATGAAAGGCTTCAAGCAGCTTCAAAACACATGCCTAAGATAATTCAAGCATTGGCTGATTCTTCGAGGGCCAACATGTTGCTAATTCAACGCTGCTCAGAAGATAAGACTTCTCTGGACAAAGGTGCCAAGGTTGAAGAGTTGCTTATTACACCAACTCCTAGTGCATCTGCAAAAGCTCCGTTGTCATTGAGTAAATTGGGCTTGAAAAAATTAAACCCTGACCGAGATGTGGATTTTAATTGCAATCCAACTACTTTGAGCAACTCTTCAGTGTCTGGTGAAAGAAATCCCTTCAGAACTCCACCATCTTTGTCTTGTCGTGTAGATAAGCTTGCCAAGGATGCTGAGCACAATGGACCATCTGACCAGCCTTTTTTGAGGCAGCACAAAAAGGTGTTGCTTGAACTTTTAGATCAAGTCGAAGATGCAATTGGTGTTGATAATGATGCAGTTTGTGATAAAAACACACATTCCTTTAAATCGCAAGATGACTTTGCTAACAAGCTCCCTGTCAAAGTTAACCATCAAGTTGAAAGGACAACATCACATATACCTAAAAAAGTTGGTGTTTTCTCCGATTCTAGTTACTTGGTTTTGGAGGTATCTGAAAAATTGCAACCTGCTGCTGAAGGCCCATACAAGGTGCTTCGTTTACTAAATGAACAAACTGGAGAAGAGCGAGCTGTAAATTTGTGGGATGAATGGTCTTACAGTGTAATTGCCCCCGGAGATACTGTGAATGTAATTGGTCAATTTGATGAAGGGGGAAATTGTGATATTAATCATGATAATAATTTTTTGATTGTACACCCAGATATTCTTGTGTCTGGAACACGGGTTGCTGCCAGTTTTAGTTGCCCAAGGAGAACTGTCTTAGATGAGAGACTAAAGTCCAATGAGCACTCAAGTGTAGCTTTATGTGGAACCTTGCTTCATCAAATTTTTCAGGCTGGGCTTACAAATGACAATCCTACAATAGACTTCTTGGAATGTTACACGGAAGTGGTTTTACAGAGAAATGTTGAAAGTTTATTTGCATGTGGAGTAAATGAAAAGGATGTTCGCAAAACCATGATTGATGCTATCCCTAGAATATACAGTTGGATTATGCTGTTCAGAAATATGGAGGAAAGAGAAGACCCTAACGTTAATTTTGGATGTGTTAATGGAATGAAGAACGTTGGCATATCTGAGGCAAGCTCTAATTTGCTATCATGTGTAATTGATATTGAAGAAATGGCATGGACACCAAAATATGGTTTGAAAGGGATGATTGATGCTTCGGTTAGAGTGAAGGTTCAATCTAGAAAAGATAAACCAGAGGAAAAGATCATGCCACTAGAGTTCAAAACTGGAAAATCACCTAGTAGCCAGACATCAGTAGAACATAATGCCCAAGTAATTTTGTACACTCTCCTGATGTCTGAAAGGTACCAGAAGACCATTGATTCTGGTCTTCTGTATTATCTCCAAACAGATCAGACACATGGCATTACGGTTCAAAGATCTGACATAGTTGGGTTGATAATACGTCGCAATGAGCTAGCAAGTGATATTTTGAAGGCATTAGTATTGCAACAACTTCCACCAGTGTTACAGAGTCCTAGCATGTGCAGAGGCTGCCGCCATCTTAATGTCTGTAGCATTTATCATAAGGCACATGGTGGAAGCATCAAGAGCAATGAATCGGGAGATGTTTTCAGTTCCAATACTAATCACTTGACATCATCTCATTCTAAGTTCCTCTGCCATTGGGATCATTTGATTGACTTAGAAGCTAAAGGGACTGAGTTTTTAAAGAAAGACGTGTGGCGATCATATAATTTGGGGACTCGCAGTGCCGGTGGTGTTTCTTCTATTGTTATTGATGCTTCACAAGGAATGCCATATTCAAAATCTCATGAAAATAATAGTTTCGTTTATCGTTTTGTACCACATGATACTTCTTGCCCCTCTATAGTTTCTGATGATGATCCTTCTATTGCCTCTTTGAAAAATGATTTAGATCTCACACTGAGAAGTGGTGACTATGTGATATTGAGTAATGAATCAAGCCATCAAACTATTGCAAAAGGGGTGATTTCAGATATTAGTCAGAATCATATATCTGTTTCCTTTTCCAAGCTCTTGAGAATTCCTGGGAGGTCTTCCACGGAACATGATCTCCTTCAGCAAGTTTGGAGAATTGACAAGGATGAAGCTGTGACTTCGTTTGCAATTATGAGGTTTAATCTTGTACAACTTTTTCTACAAAATGATCAAAGTGCTCATCTCCGGAGGATGATTGTTGACCTTGAGGCCCCTAGATTTGACAGTGGTTCTATAGTTAGCCAGGATCCAGCAATATCTTACGTTTGGTCTGAGCAGAGTTTGAATGATGATCAACGTAGAGCGATTCTCAAGATACTTGTAGCAAAAGATTATGCACTTATATTAGGGATGCCTGGAACGGGGAAGACATCCACCATGGTCCATGCTGTGAAAGCCTTGTTGATTAGAGGCACATCCATTTTACTAACAGCATTTACAAATTCTGCTGTTGATAATTTACTCATCAAATTAAAAGCTCAGGGCATTGATTTTGTACGTGTTGGAAGACATGGAGTAGTGAATGAAGAGGTCAGAGGGTATTGTCTTTCAGAAACAAACGTACAAACCGTTGAAGATATCAAAAATAGGTTAGACCAAGTCAAAGTTGTTGCAGTTACTTGTTTGGGCATTTCCAGTCCCCTGCTTGCCGACAAGAGATTTGATGTATGCATTATGGATGAAGCCGGACAGACTACTCTGCCGGTGTCCTTGGGCCCTCTAAGATTTGCTTCAACGTTTGTTCTTGTGGGGGATCATTATCAATTGCCACCACTTGTCCATAGTACAGAGGCCCGAGAAAATGGCATGGGGATGAGTTTGTTTTGTAGGCTTTCAGAAGCCCATCCACAGGCGATTTCAGCTTTACAGAGTCAGTACCGTATGTGTCAGGGTATTATGGACTTGTCAAATGCCTTGATATATGGTGACAGATTAAGGTGTGGTTCATCTGAAATAGCTAATGCCAAACTTGAGTTTTCTGGCTTAAACTGCTGTTTGCCTTGGCTAGAAGATGCTTTGAATCCTCGAAGACCAGTGATATTTATTGATACTGATATGTTGCCTGCCTTAGAGGAAAGAGATCAGAAAATTGTAAATAACCCTATGGAAGCTCACATAATTGCTGAGGTTGCAAAGGAATTGGTAAAAAATGGAATTGAAGGAGACCGCATTGGCATTATTACTCCCTATAATTCACAAGCAAACCTCATCCGGCAAGCTGCTTGCATAACGTCCTTGGAGATACATACCATTGACAAATACCAGGGTAGAGATAAAGACTGTATATTATTATCTTTTGTACGGTCGTGTGAGAACCCAACAAGCTGCGTGGCTTCTCTACTCGGAGACTGGCACAGGATAAATGTAGCTCTTACTCGTGCTAAGAGAAAGTTGATCATGGTGGGGTCTCGTAAAACTCTATTGAAGGTTCCACTACTGAAGCTTCTCATTAAGAAAGTTGAAGAGCAATCTGGAATTTTAAGTGTGTCTAAGAAGGATATATATAGAAATGGTGAGCTCATTAGATGTTCTCAAATTGCTTCTTCAAAACAAAAATTAGATGTTCCCAAATGA 4071 0.4041 MPPKKKLNTSSSSKKPNPQPSKYGIQHFFDRHATQQQSQKLQSNNSTSQVVAPDSLPPPEKPKDADAPSGASLQGGTPNDSVIPAVTDDTDNLSEVSPEISKSMSRKRFKFSPGMFIKQSQDDGADEVTWKISPVNERLQAASKHMPKIIQALADSSRANMLLIQRCSEDKTSLDKGAKVEELLITPTPSASAKAPLSLSKLGLKKLNPDRDVDFNCNPTTLSNSSVSGERNPFRTPPSLSCRVDKLAKDAEHNGPSDQPFLRQHKKVLLELLDQVEDAIGVDNDAVCDKNTHSFKSQDDFANKLPVKVNHQVERTTSHIPKKVGVFSDSSYLVLEVSEKLQPAAEGPYKVLRLLNEQTGEERAVNLWDEWSYSVIAPGDTVNVIGQFDEGGNCDINHDNNFLIVHPDILVSGTRVAASFSCPRRTVLDERLKSNEHSSVALCGTLLHQIFQAGLTNDNPTIDFLECYTEVVLQRNVESLFACGVNEKDVRKTMIDAIPRIYSWIMLFRNMEEREDPNVNFGCVNGMKNVGISEASSNLLSCVIDIEEMAWTPKYGLKGMIDASVRVKVQSRKDKPEEKIMPLEFKTGKSPSSQTSVEHNAQVILYTLLMSERYQKTIDSGLLYYLQTDQTHGITVQRSDIVGLIIRRNELASDILKALVLQQLPPVLQSPSMCRGCRHLNVCSIYHKAHGGSIKSNESGDVFSSNTNHLTSSHSKFLCHWDHLIDLEAKGTEFLKKDVWRSYNLGTRSAGGVSSIVIDASQGMPYSKSHENNSFVYRFVPHDTSCPSIVSDDDPSIASLKNDLDLTLRSGDYVILSNESSHQTIAKGVISDISQNHISVSFSKLLRIPGRSSTEHDLLQQVWRIDKDEAVTSFAIMRFNLVQLFLQNDQSAHLRRMIVDLEAPRFDSGSIVSQDPAISYVWSEQSLNDDQRRAILKILVAKDYALILGMPGTGKTSTMVHAVKALLIRGTSILLTAFTNSAVDNLLIKLKAQGIDFVRVGRHGVVNEEVRGYCLSETNVQTVEDIKNRLDQVKVVAVTCLGISSPLLADKRFDVCIMDEAGQTTLPVSLGPLRFASTFVLVGDHYQLPPLVHSTEARENGMGMSLFCRLSEAHPQAISALQSQYRMCQGIMDLSNALIYGDRLRCGSSEIANAKLEFSGLNCCLPWLEDALNPRRPVIFIDTDMLPALEERDQKIVNNPMEAHIIAEVAKELVKNGIEGDRIGIITPYNSQANLIRQAACITSLEIHTIDKYQGRDKDCILLSFVRSCENPTSCVASLLGDWHRINVALTRAKRKLIMVGSRKTLLKVPLLKLLIKKVEEQSGILSVSKKDIYRNGELIRCSQIASSKQKLDVPK 1356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00860 1356 CDD DEXXQc_DNA2 926 1126 IPR026851 GO:0017116
Trre14g00860 1356 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 1023 1124 - -
Trre14g00860 1356 MobiDBLite consensus disorder prediction 1 20 - -
Trre14g00860 1356 FunFam DNA replication helicase 1125 1337 - -
Trre14g00860 1356 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 869 1018 - -
Trre14g00860 1356 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 926 1312 IPR027417 -
Trre14g00860 1356 Pfam AAA domain 1103 1303 IPR041679 -
Trre14g00860 1356 Gene3D - 854 1124 IPR027417 -
Trre14g00860 1356 FunFam DNA replication helicase Dna2 506 684 - -
Trre14g00860 1356 CDD SF1_C_Upf1 1127 1303 IPR047187 -
Trre14g00860 1356 CDD DNA2_N-like 412 655 - -
Trre14g00860 1356 Gene3D - 1125 1333 IPR027417 -
Trre14g00860 1356 MobiDBLite consensus disorder prediction 30 53 - -
Trre14g00860 1356 Pfam AAA domain 1026 1094 IPR041677 GO:0004386
Trre14g00860 1356 Pfam AAA domain 927 1017 IPR041677 GO:0004386
Trre14g00860 1356 Gene3D - 531 684 IPR011604 -
Trre14g00860 1356 PANTHER DNA2/NAM7 HELICASE FAMILY 210 1322 IPR045055 -
Trre14g00860 1356 MobiDBLite consensus disorder prediction 72 99 - -
Trre14g00860 1356 Pfam DNA replication factor Dna2 357 567 IPR014808 -
Trre14g00860 1356 Pfam Domain of unknown function DUF83 575 684 IPR022765 -
Trre14g00860 1356 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00860 Trre-Chr14 7274402 7291557 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00860 1 1068 Core DNA Replication Machinery Family AT1G08840 53.571 0.0 1085
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00860 K10742 - gmx:100799415 1758.81