Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00859 ATGCCTCCAAAGAAGAAACTCAACACTTCATCATCTTCCAAAAAACCCAATCCACAACCTTCCAAATACGGTATTCAACACTTCTTCGATCGTCACGCAACTCAACAACAATCTCAGAAACTTCAATCCAACAATTCAACCTCTCAGGTTGTTGCTCCCGATTCTCTTCCACCGCCGGAAAAACCTAAAGATGCTGATGCTCCGTCGGGTGCATCTTTGCAGGGTGGTACACCTAATGATTCAGTGATACCGGCGGTCACTGATGATACAGATAACCTCTCTGAGGTGTCTCCGGAGATTTCTAAGTCTATGTCACGGAAGCGATTCAAATTCTCACCTGGAATGTTTATCAAGCAAAGTCAGGATGATGGGGCTGATGAGGTTACATGGAAGATATCTCCAGTGAATGAAAGGCTTCAAGCAGCTTCAAAACACATGCCTAAGATAATTCAAGCATTGGCTGATTCTTCGAGGGCCAACATGTTGCTAATTCAACGCTGCTCAGAAGATAAGACTTCTCTGGACAAAGGTGCCAAGGTTGAAGAGTTGCTTATTACACCAACTCCTAGTGCATCTGCAAAAGCTCCGTTGTCATTGAGTAAATTGGGCTTGAAAAAATTAAACCCTGACCGAGATGTGGATTTTAATTGCAATCCAACTACTTTGAGCAACTCTTCAGTGTCTGGTGAAAGAAATCCCTTCAGAACTCCACCATCTTTGTCTTGTCGTGTAGATAAGCTTGCCAAGGATGCTGAGCACAATGGACCATCTGACCAGCCTTTTTTGAGGCAGCACAAAAAGGTGTTGCTTGAACTTTTAGATCAAGTCGAAGATGCAATTGGTGTTGATAATGATGCAGTTTGTGATAAAAACACACATTCCTTTAAATCGCAAGATGACTTTGCTAACAAGCTCCCTGTCAAAGTTAACCATCAAGTTGAAAGGACAACATCACATATACCTAAAAAAGTTGGTGTTTTCTCCGATTCTAGTTACTTGGTTTTGGAGGTATCTGAAAAATTGCAACCTGCTGCTGAAGGCCCATACAAGGTGCTTCGTTTACTAAATGAACAAACTGGAGAAGAGCGAGCTGTAAATTTGTGGGATGAATGGTCTTACAGTGTAATTGCCCCCGGAGATACTGTGAATGTAATTGGTCAATTTGATGAAGGGGGAAATTGTGATATTAATCATGATAATAATTTTTTGATTGTACACCCAGATATTCTTGTGTCTGGAACACGGGTTGCTGCCAGTTTTAGTTGCCCAAGGAGAACTGTCTTAGATGAGAGACTAAAGTCCAATGAGCACTCAAGTGTAGCTTTATGTGGAACCTTGCTTCATCAAATTTTTCAGGCTGGGCTTACAAATGACAATCCTACAATAGACTTCTTGGAATGTTACACGGAAGTGGTTTTACAGAGAAATGTTGAAAGTTTATTTGCATGTGGAGTAAATGAAAAGGATGTTCGCAAAACCATGATTGATGCTATCCCTAGAATATACAGTTGGATTATGCTGTTCAGAAATATGGAGGAAAGAGAAGACCCTAACGTTAATTTTGGATGTGTTAATGGAATGAAGAACGTTGGCATATCTGAGGTAATTGATATTGAAGAAATGGCATGGACACCAAAATATGGTTTGAAAGGGATGATTGATGCTTCGGTTAGAGTGAAGGTTCAATCTAGAAAAGATAAACCAGAGGAAAAGATCATGCCACTAGAGTTCAAAACTGGAAAATCACCTAGTAGCCAGACATCAGTAGAACATAATGCCCAAGTAATTTTGTACACTCTCCTGATGTCTGAAAGGTACCAGAAGACCATTGATTCTGGTCTTCTGTATTATCTCCAAACAGATCAGACACATGGCATTACGGTTCAAAGATCTGACATAGTTGGGTTGATAATACGTCGCAATGAGCTAGCAAGTGATATTTTGAAGGCATTAGTATTGCAACAACTTCCACCAGTGTTACAGAGTCCTAGCATGTGCAGAGGCTGCCGCCATCTTAATGTCTGTAGCATTTATCATAAGGCACATGGTGGAAGCATCAAGAGCAATGAATCGGGAGATGTTTTCAGTTCCAATACTAATCACTTGACATCATCTCATTCTAAGTTCCTCTGCCATTGGGATCATTTGATTGACTTAGAAGCTAAAGGGACTGAGTTTTTAAAGAAAGACGTGTGGCGATCATATAATTTGGGGACTCGCAGTGCCGGTGGTGTTTCTTCTATTGTTATTGATGCTTCACAAGGAATGCCATATTCAAAATCTCATGAAAATAATAGTTTCGTTTATCGTTTTGTACCACATGATACTTCTTGCCCCTCTATAGTTTCTGATGATGATCCTTCTATTGCCTCTTTGAAAAATGATTTAGATCTCACACTGAGAAGTGGTGACTATGTGATATTGAGTAATGAATCAAGCCATCAAACTATTGCAAAAGGGGTGATTTCAGATATTAGTCAGAATCATATATCTGTTTCCTTTTCCAAGCTCTTGAGAATTCCTGGGAGGTCTTCCACGGAACATGATCTCCTTCAGCAAGTTTGGAGAATTGACAAGGATGAAGCTGTGACTTCGTTTGCAATTATGAGGTTTAATCTTGTACAACTTTTTCTACAAAATGATCAAAGTGCTCATCTCCGGAGGATGATTGTTGACCTTGAGGCCCCTAGATTTGACAGTGGTTCTATAGTTAGCCAGGATCCAGCAATATCTTACGTTTGGTCTGAGCAGAGTTTGAATGATGATCAACGTAGAGCGATTCTCAAGATACTTGTAGCAAAAGATTATGCACTTATATTAGGGATGCCTGGAACGGGGAAGACATCCACCATGGTCCATGCTGTGAAAGCCTTGTTGATTAGAGGCACATCCATTTTACTAACAGCATTTACAAATTCTGCTGTTGATAATTTACTCATCAAATTAAAAGCTCAGGGCATTGATTTTGTACGTGTTGGAAGACATGGAGTAGTGAATGAAGAGGTCAGAGGGTATTGTCTTTCAGAAACAAACGTACAAACCGTTGAAGATATCAAAAATAGGTTAGACCAAGTCAAAGTTGTTGCAGTTACTTGTTTGGGCATTTCCAGTCCCCTGCTTGCCGACAAGAGATTTGATGTATGCATTATGGATGAAGCCGGACAGACTACTCTGCCGGTGTCCTTGGGCCCTCTAAGATTTGCTTCAACGTTTGTTCTTGTGGGGGATCATTATCAATTGCCACCACTTGTCCATAGTACAGAGGCCCGAGAAAATGGCATGGGGATGAGTTTGTTTTGTAGGCTTTCAGAAGCCCATCCACAGGCGATTTCAGCTTTACAGAGTCAGTACCGTATGTGTCAGGGTATTATGGACTTGTCAAATGCCTTGATATATGGTGACAGATTAAGGTGTGGTTCATCTGAAATAGCTAATGCCAAACTTGAGTTTTCTGGCTTAAACTGCTGTTTGCCTTGGCTAGAAGATGCTTTGAATCCTCGAAGACCAGTGATATTTATTGATACTGATATGTTGCCTGCCTTAGAGGAAAGAGATCAGAAAATTGTAAATAACCCTATGGAAGCTCACATAATTGCTGAGGTTGCAAAGGAATTGGTAAAAAATGGAATTGAAGGAGACCGCATTGGCATTATTACTCCCTATAATTCACAAGCAAACCTCATCCGGCAAGCTGCTTGCATAACGTCCTTGGAGATACATACCATTGACAAATACCAGGGTAGAGATAAAGACTGTATATTATTATCTTTTGTACGGTCGTGTGAGAACCCAACAAGCTGCGTGGCTTCTCTACTCGGAGACTGGCACAGGATAAATGTAGCTCTTACTCGTGCTAAGAGAAAGTTGATCATGGTGGGGTCTCGTAAAACTCTATTGAAGGTTCCACTACTGAAGCTTCTCATTAAGAAAGTTGAAGAGCAATCTGGAATTTTAAGTGTGTCTAAGAAGGATATATATAGAAATGGTGAGCTCATTAGATGTTCTCAAATTGCTTCTTCAAAACAAAAATTAGATGTTCCCAAATGA 4047 0.4043 MPPKKKLNTSSSSKKPNPQPSKYGIQHFFDRHATQQQSQKLQSNNSTSQVVAPDSLPPPEKPKDADAPSGASLQGGTPNDSVIPAVTDDTDNLSEVSPEISKSMSRKRFKFSPGMFIKQSQDDGADEVTWKISPVNERLQAASKHMPKIIQALADSSRANMLLIQRCSEDKTSLDKGAKVEELLITPTPSASAKAPLSLSKLGLKKLNPDRDVDFNCNPTTLSNSSVSGERNPFRTPPSLSCRVDKLAKDAEHNGPSDQPFLRQHKKVLLELLDQVEDAIGVDNDAVCDKNTHSFKSQDDFANKLPVKVNHQVERTTSHIPKKVGVFSDSSYLVLEVSEKLQPAAEGPYKVLRLLNEQTGEERAVNLWDEWSYSVIAPGDTVNVIGQFDEGGNCDINHDNNFLIVHPDILVSGTRVAASFSCPRRTVLDERLKSNEHSSVALCGTLLHQIFQAGLTNDNPTIDFLECYTEVVLQRNVESLFACGVNEKDVRKTMIDAIPRIYSWIMLFRNMEEREDPNVNFGCVNGMKNVGISEVIDIEEMAWTPKYGLKGMIDASVRVKVQSRKDKPEEKIMPLEFKTGKSPSSQTSVEHNAQVILYTLLMSERYQKTIDSGLLYYLQTDQTHGITVQRSDIVGLIIRRNELASDILKALVLQQLPPVLQSPSMCRGCRHLNVCSIYHKAHGGSIKSNESGDVFSSNTNHLTSSHSKFLCHWDHLIDLEAKGTEFLKKDVWRSYNLGTRSAGGVSSIVIDASQGMPYSKSHENNSFVYRFVPHDTSCPSIVSDDDPSIASLKNDLDLTLRSGDYVILSNESSHQTIAKGVISDISQNHISVSFSKLLRIPGRSSTEHDLLQQVWRIDKDEAVTSFAIMRFNLVQLFLQNDQSAHLRRMIVDLEAPRFDSGSIVSQDPAISYVWSEQSLNDDQRRAILKILVAKDYALILGMPGTGKTSTMVHAVKALLIRGTSILLTAFTNSAVDNLLIKLKAQGIDFVRVGRHGVVNEEVRGYCLSETNVQTVEDIKNRLDQVKVVAVTCLGISSPLLADKRFDVCIMDEAGQTTLPVSLGPLRFASTFVLVGDHYQLPPLVHSTEARENGMGMSLFCRLSEAHPQAISALQSQYRMCQGIMDLSNALIYGDRLRCGSSEIANAKLEFSGLNCCLPWLEDALNPRRPVIFIDTDMLPALEERDQKIVNNPMEAHIIAEVAKELVKNGIEGDRIGIITPYNSQANLIRQAACITSLEIHTIDKYQGRDKDCILLSFVRSCENPTSCVASLLGDWHRINVALTRAKRKLIMVGSRKTLLKVPLLKLLIKKVEEQSGILSVSKKDIYRNGELIRCSQIASSKQKLDVPK 1348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00859 1348 CDD DEXXQc_DNA2 918 1118 IPR026851 GO:0017116
Trre14g00859 1348 PANTHER DNA2/NAM7 HELICASE FAMILY 210 1314 IPR045055 -
Trre14g00859 1348 Pfam AAA domain 1095 1295 IPR041679 -
Trre14g00859 1348 Gene3D - 412 676 IPR011604 -
Trre14g00859 1348 MobiDBLite consensus disorder prediction 1 20 - -
Trre14g00859 1348 FunFam DNA replication helicase 1117 1329 - -
Trre14g00859 1348 Pfam AAA domain 1018 1086 IPR041677 GO:0004386
Trre14g00859 1348 Pfam AAA domain 919 1009 IPR041677 GO:0004386
Trre14g00859 1348 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 861 1010 - -
Trre14g00859 1348 CDD SF1_C_Upf1 1119 1295 IPR047187 -
Trre14g00859 1348 FunFam DNA replication helicase Dna2 519 676 - -
Trre14g00859 1348 MobiDBLite consensus disorder prediction 30 53 - -
Trre14g00859 1348 Pfam DNA replication factor Dna2 357 559 IPR014808 -
Trre14g00859 1348 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 1015 1116 - -
Trre14g00859 1348 Gene3D - 846 1116 IPR027417 -
Trre14g00859 1348 MobiDBLite consensus disorder prediction 72 99 - -
Trre14g00859 1348 CDD DNA2_N-like 412 647 - -
Trre14g00859 1348 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 918 1304 IPR027417 -
Trre14g00859 1348 Gene3D - 1117 1325 IPR027417 -
Trre14g00859 1348 Pfam Domain of unknown function DUF83 567 676 IPR022765 -
Trre14g00859 1348 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00859 Trre-Chr14 7274402 7291557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00859 1 1060 Core DNA Replication Machinery Family AT1G08840 53.967 0.0 1092
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00859 K10742 - gmx:100799415 1766.13