Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00855 ATGGTTTCTTCCTCCATTAACCCATTCTCTATAATGCCAACTCCTTCATTTAATGTTGTAGACGACAATGGATCACAAAGTGAAATTTTCAATGGCGAAAATCCAATGACCTTTGCACCAAACAATAACAAAATGGAAGTCATGCATGGTCGCCTTAACACTAGCAAAGGAATTTGGGATTTGGCCAAAAACAATCTCTTTCAATACGATGAAACTTCACAATCTCGGACAAGTCCCTTTCCATCAGTTAAGCCTAAGCTTCAAGGCGATCTCTCTGGCATTGGTGGAATTGGGAACAACTCCCGAGATAGTGATCCAGAATTTGTTCTTAGTGAACAAAAGCGACAAAAGAGGATTCAAAATAACAATGAAATTCAACTCAGAAATCCCAATATAATCAAAGGCCAATGGACTGCGAACGAGGATAGGATTCTTGTCCAATTGGTGAATCACTATGGGCTTAGAAGATGGTCCAAAGTTGCTAAACATCTGAAAGGCAGGATCGGAAAACAGTGCAGGGAGAGATGGAATAACCATCTTCGACCGGATATTAAGAAAGAGTCATGGAGCGAAGAGGAGGACAGATTACTGATTGAAGCTCACAAGATAGTTGGGAACAAATGGGCTGAAATTGCGAAGAGCTTGCCTGGGCGCACCGAGAACTCTATCAAGAACCACTGGAACGCCACTAAGCGCAGCCAGAATGCCAAGAAGAGGCCGAATAGGCGGAATAGTTTGAAGGGAACACTACTTCAGAAATACATTAGCGAAGTAACTGCCGCTAAGGAAGCTGAAAAGGAGCTGATGATGGAGAATCCCAGAAACATGATGAATATTGAGAATCAACAAAATTTTGAAAGTTCTGAGAGTGATTACAATTCTGAAGGTTTAGCTACTCCTGAGGATGAAATTGAAGGCTATGTTCCAATGATGTTCAATGATACTATTGATGATGGAATGGCAAGTGGTTCTGGCACTGCAGTGAATTATGAGTTTGGATCATATGGAATGGAAGGTGGTTCCGGCACAACAATGAATTATGAGTTTTATCCTGAGATTCCTATGAAGCAGGAACTTGATCTCATGGAGATGATGTATGGAAACAACCCTTAA 1113 0.4124 MVSSSINPFSIMPTPSFNVVDDNGSQSEIFNGENPMTFAPNNNKMEVMHGRLNTSKGIWDLAKNNLFQYDETSQSRTSPFPSVKPKLQGDLSGIGGIGNNSRDSDPEFVLSEQKRQKRIQNNNEIQLRNPNIIKGQWTANEDRILVQLVNHYGLRRWSKVAKHLKGRIGKQCRERWNNHLRPDIKKESWSEEEDRLLIEAHKIVGNKWAEIAKSLPGRTENSIKNHWNATKRSQNAKKRPNRRNSLKGTLLQKYISEVTAAKEAEKELMMENPRNMMNIENQQNFESSESDYNSEGLATPEDEIEGYVPMMFNDTIDDGMASGSGTAVNYEFGSYGMEGGSGTTMNYEFYPEIPMKQELDLMEMMYGNNP 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00855 370 ProSiteProfiles Myb-like domain profile. 181 231 IPR001005 -
Trre14g00855 370 ProSiteProfiles SANT domain profile. 184 235 IPR017884 -
Trre14g00855 370 PANTHER MYB PROTEIN-RELATED 114 259 - -
Trre14g00855 370 ProSiteProfiles Myb-like domain profile. 129 180 IPR001005 -
Trre14g00855 370 Pfam Myb-like DNA-binding domain 137 197 - -
Trre14g00855 370 SMART sant 185 233 IPR001005 -
Trre14g00855 370 SMART sant 133 182 IPR001005 -
Trre14g00855 370 SUPERFAMILY Homeodomain-like 131 227 IPR009057 -
Trre14g00855 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 185 235 IPR017930 -
Trre14g00855 370 Gene3D - 188 230 - -
Trre14g00855 370 CDD SANT 188 231 IPR001005 -
Trre14g00855 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 184 IPR017930 -
Trre14g00855 370 FunFam Transcriptional activator Myb isoform A 133 186 - -
Trre14g00855 370 Gene3D - 133 185 - -
Trre14g00855 370 MobiDBLite consensus disorder prediction 220 247 - -
Trre14g00855 370 CDD SANT 137 180 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00855 Trre-Chr14 7256202 7258996 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00855 132 258 MYB Transcription Factor Family AT4G18770 70.866 5.50e-59 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre14g00855 Myb_DNA-bind_6 9e-19 CL0123