Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00854 ATGGCTCCATTGCAACCAAGTTTAACCGTTTCTCCTTTACCATCACATTACACCACCTTTTTATACAAAAATAATCGCAACCAATTTAAGGAACGTCGTCTGAATGGAGCTAACCATCACTCTAGTTTTGATACGATGGTTTCTTCCTCCATTAACCCATTCTCTATAATGCCAACTCCTTCATTTAATGTTGTAGACGACAATGGATCACAAAGTGAAATTTTCAATGGCGAAAATCCAATGACCTTTGCACCAAACAATAACAAAATGGAAGTCATGCATGGTCGCCTTAACACTAGCAAAGGAATTTGGGATTTGGCCAAAAACAATCTCTTTCAATACGATGAAACTTCACAATCTCGGACAAGTCCCTTTCCATCAGTTAAGCCTAAGCTTCAAGGCGATCTCTCTGGCATTGGTGGAATTGGGAACAACTCCCGAGATAGTGATCCAGAATTTGTTCTTAGTGAACAAAAGCGACAAAAGAGGATTCAAAATAACAATGAAATTCAACTCAGAAATCCCAATATAATCAAAGGCCAATGGACTGCGAACGAGGATAGGATTCTTGTCCAATTGGTGAATCACTATGGGCTTAGAAGATGGTCCAAAGTTGCTAAACATCTGAAAGGCAGGATCGGAAAACAGTGCAGGGAGAGATGGAATAACCATCTTCGACCGGATATTAAGAAAGAGTCATGGAGCGAAGAGGAGGACAGATTACTGATTGAAGCTCACAAGATAGTTGGGAACAAATGGGCTGAAATTGCGAAGAGCTTGCCTGGGCGCACCGAGAACTCTATCAAGAACCACTGGAACGCCACTAAGCGCAGCCAGAATGCCAAGAAGAGGCCGAATAGGCGGAATAGTTTGAAGGGAACACTACTTCAGAAATACATTAGCGAAGTAACTGCCGCTAAGGAAGCTGAAAAGGAGCTGATGATGGAGAATCCCAGAAACATGATGAATATTGAGAATCAACAAAATTTTGAAAGTTCTGAGAGTGATTACAATTCTGAAGGTTTAGCTACTCCTGAGGATGAAATTGAAGGCTATGTTCCAATGATGTTCAATGATACTATTGATGATGGAATGGCAAGTGGTTCTGGCACTGCAGTGAATTATGAGTTTGGATCATATGGAATGGAAGGTGGTTCCGGCACAACAATGAATTATGAGTTTTATCCTGAGATTCCTATGAAGCAGGAACTTGATCTCATGGAGATGATGTATGGAAACAACCCTTAA 1248 0.4095 MAPLQPSLTVSPLPSHYTTFLYKNNRNQFKERRLNGANHHSSFDTMVSSSINPFSIMPTPSFNVVDDNGSQSEIFNGENPMTFAPNNNKMEVMHGRLNTSKGIWDLAKNNLFQYDETSQSRTSPFPSVKPKLQGDLSGIGGIGNNSRDSDPEFVLSEQKRQKRIQNNNEIQLRNPNIIKGQWTANEDRILVQLVNHYGLRRWSKVAKHLKGRIGKQCRERWNNHLRPDIKKESWSEEEDRLLIEAHKIVGNKWAEIAKSLPGRTENSIKNHWNATKRSQNAKKRPNRRNSLKGTLLQKYISEVTAAKEAEKELMMENPRNMMNIENQQNFESSESDYNSEGLATPEDEIEGYVPMMFNDTIDDGMASGSGTAVNYEFGSYGMEGGSGTTMNYEFYPEIPMKQELDLMEMMYGNNP 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00854 415 ProSiteProfiles SANT domain profile. 229 280 IPR017884 -
Trre14g00854 415 CDD SANT 182 225 IPR001005 -
Trre14g00854 415 Gene3D - 178 230 - -
Trre14g00854 415 FunFam Transcriptional activator Myb isoform A 178 231 - -
Trre14g00854 415 ProSiteProfiles Myb-like domain profile. 226 276 IPR001005 -
Trre14g00854 415 PANTHER MYB PROTEIN-RELATED 149 301 - -
Trre14g00854 415 SUPERFAMILY Homeodomain-like 176 272 IPR009057 -
Trre14g00854 415 ProSiteProfiles Myb-like domain profile. 174 225 IPR001005 -
Trre14g00854 415 Pfam Myb-like DNA-binding domain 182 242 - -
Trre14g00854 415 Gene3D - 233 275 - -
Trre14g00854 415 MobiDBLite consensus disorder prediction 265 292 - -
Trre14g00854 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 230 280 IPR017930 -
Trre14g00854 415 CDD SANT 233 276 IPR001005 -
Trre14g00854 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 174 229 IPR017930 -
Trre14g00854 415 SMART sant 230 278 IPR001005 -
Trre14g00854 415 SMART sant 178 227 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00854 Trre-Chr14 7256202 7259131 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00854 177 303 MYB Transcription Factor Family AT4G18770 70.866 1.27e-58 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre14g00854 Myb_DNA-bind_6 1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00854 K09422 - psat:127129356 471.085