Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00850 ATGGAGAGTGTGAGAGAAACAGAGAGAGAGAGTGATCAATGGACCTACGTGAGTCCAAGAAGGAAAAGAGTATCTAGACTGGATCGAGGCAAGGCTGACAACAACAAAACAACTACTGCGAGCTCCGATAGGACAACTACATGCTATGTCAACAACCTACCAGAAGATATCAGTGAGAAAGAGATGGCGAGAATCTTTGAGAGGTGGGGCAATGTGGTGGATGTGTACATTGCGAAAAAAAGAAACAAAGCTGGAAGGATATTTGGATTCGTTCGATACGAAGAAGTCAGAAATGAGAAGTGGCTGGAAGATCGACTCAAAGATGTGTGGTTCGGATCTTACAAGGTGTGGGTAAACATCTCTAAATATGGGAGGCATCAAAACAAAAACTTTAGAAGACAACACAAGGTGGAAAAAGCCCAAGGGTCAAGAAAGAAGATACAAGGTAACAACTACACAAACAGGGACCAAAAATTTCGGCTAGGGCAGAGCATCAGAAAGGAAGGAATGACATATGCAGAAGCAACAACAAATACTCCTGGAAAAAGAAACACTGAAGTTAGAAGAAGGGAGGGTCTAACACAGAATATAGAAGATATTCAAGAAGACAGACAGAGATCACATAGAGCAGGAGTCGGCAAAGAAGATACAGGGTTATCCATAACCATTAATGAAGAGGAGATGGTGTGGGCCAAACAAGGATATGTAGGATTCGTCAAGAAGGTAGAAGAAATACATCTGATACAACATCGGTTAGAGGAAGAAGGTATCAATTCAGTAAAGGTAATCCCAATGGGCGGCGAAAGAGTGTTTTTGAAAGCGAATGAGAATGAAGATTTTAGAATGCTGGTGAACGAGTCTCAACAAGTATTCCAACAATTGTTTAGTTTTGTTAGAGAATGGAAGCCAAGAGACGTCGGAGGGGATCGATATGTATGGATCCGTATATTTGGAATCCCTGTTCACGCTTGGAGTAAAAAGACGTTCTCACTATTAACAATTTCTTTAGGAAGCTTAATTGAAATTGATCAGACAACCGAGGAAATGGAAAGGCTAGATATGGCTAGATTACTTGTGAGAACACCGATGATGGAGTTCATCAACAAGATGATTAAAGTTAAAATAAATAATGAAAGCTTTCCTATAAGAATCACAGAAGAGACATGTGATTGTGCCTTTGAAGAAGAAATGGTGAGTTGTGTTGAGAACTCAGTTGATGAAGATGACAGGTCAATAGATTCAGAAGGCACATGCATCCCTGCATCAATGGCTTCAATGGAAGATGAAGAGACGCTGAATAGAATAGAAGAGAACTATCAGCAATTAATGGGGGAAGCTCAAAAGGGGGACACAATTAATGGAGGGGAGGAAAAACATCCAGAGAATGGTGAAGATACACATGAAAGCAGGGGAAAAGAGACGCCTCGGGAACCAACTCTGCTAATTAATGAGGTGGAAGAGAATTTAAAGGAAGGCGGCGAAATTAAAGATAGCGTGGGAAAAGAACTGACAAACGAACCAGTAGAAGTGCGGGACAGATTAGAGGAAAATATGACAAGGACACCAGGAGATATCACTGAAAAGGATATTGGGCCAGCACATGAAGCAAGCCCACAAAGGCAAAGTGGAGAATATGAAGCCCAAAACATAACTTCAAGAGATAAATTGTTACAAAGAGGGGATATAGAAAAAGATAATGAAATTTGTGAAGGCCCATCACATAATAACAAAGACTCTGGGGTTCCACATATGTTGAGCAAAATTAATGAAGCCCAGTTACAAGACCAACCAATAGAAGGAACAAATATTGGTGCCACAGTACGAGATCCGTCAGAATCAAATGAACCACAAGATCAAGGACAAAAATGTGAACAAGGAGGCTACAAATGTGTTAAGGAGTCAACAGCAAAAGACAAAAATTCAAGGGTAGTAGATGATGACAGGCAAGATTGTTCAGAACTTGGCGAAAAGAGTTCGAGACCAGGCGAAGAAGCGACAAGCCATTCATGTAAGGAAAGAAGAAAGAGAAGGATTGCAATTTTAAAAGAGAAGAAGAAAACATTCAAAAAAAAGAAAACAGAAGCATCAAAATGTACGTGTAATCAACGTACCCGAACACAAAAGCAAAATATATCCAAGTTAGAGCTTTTGGTGGAAAATAATGAGATGGAAAGGAAGAACTGGAAAATATTACATGGAAGTGCTAAAGAAATTGCCAAAGACGTGTGGGATTTGGGGAAAGATTTTGGGTTAATGCATAAAGGAGAAGAAGGGGAAATCTTACAAGAATTAACTATGGAGACAAATGAAGGAGATGGAGCCCAACAATGA 2331 0.4003 MESVRETERESDQWTYVSPRRKRVSRLDRGKADNNKTTTASSDRTTTCYVNNLPEDISEKEMARIFERWGNVVDVYIAKKRNKAGRIFGFVRYEEVRNEKWLEDRLKDVWFGSYKVWVNISKYGRHQNKNFRRQHKVEKAQGSRKKIQGNNYTNRDQKFRLGQSIRKEGMTYAEATTNTPGKRNTEVRRREGLTQNIEDIQEDRQRSHRAGVGKEDTGLSITINEEEMVWAKQGYVGFVKKVEEIHLIQHRLEEEGINSVKVIPMGGERVFLKANENEDFRMLVNESQQVFQQLFSFVREWKPRDVGGDRYVWIRIFGIPVHAWSKKTFSLLTISLGSLIEIDQTTEEMERLDMARLLVRTPMMEFINKMIKVKINNESFPIRITEETCDCAFEEEMVSCVENSVDEDDRSIDSEGTCIPASMASMEDEETLNRIEENYQQLMGEAQKGDTINGGEEKHPENGEDTHESRGKETPREPTLLINEVEENLKEGGEIKDSVGKELTNEPVEVRDRLEENMTRTPGDITEKDIGPAHEASPQRQSGEYEAQNITSRDKLLQRGDIEKDNEICEGPSHNNKDSGVPHMLSKINEAQLQDQPIEGTNIGATVRDPSESNEPQDQGQKCEQGGYKCVKESTAKDKNSRVVDDDRQDCSELGEKSSRPGEEATSHSCKERRKRRIAILKEKKKTFKKKKTEASKCTCNQRTRTQKQNISKLELLVENNEMERKNWKILHGSAKEIAKDVWDLGKDFGLMHKGEEGEILQELTMETNEGDGAQQ 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00850 776 MobiDBLite consensus disorder prediction 631 671 - -
Trre14g00850 776 Pfam Domain of unknown function (DUF4283) 243 359 IPR025558 -
Trre14g00850 776 MobiDBLite consensus disorder prediction 556 572 - -
Trre14g00850 776 MobiDBLite consensus disorder prediction 451 534 - -
Trre14g00850 776 MobiDBLite consensus disorder prediction 589 621 - -
Trre14g00850 776 SUPERFAMILY RNA-binding domain, RBD 42 129 IPR035979 GO:0003676
Trre14g00850 776 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 97 IPR000504 GO:0003723
Trre14g00850 776 Coils Coil 425 445 - -
Trre14g00850 776 Gene3D - 1 136 IPR012677 -
Trre14g00850 776 PANTHER DUF4283 DOMAIN PROTEIN 211 429 - -
Trre14g00850 776 SMART rrm1_1 47 119 IPR000504 GO:0003723
Trre14g00850 776 MobiDBLite consensus disorder prediction 131 150 - -
Trre14g00850 776 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 123 IPR000504 GO:0003723
Trre14g00850 776 CDD RRM_SF 49 97 - -
Trre14g00850 776 MobiDBLite consensus disorder prediction 541 555 - -
Trre14g00850 776 MobiDBLite consensus disorder prediction 449 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00850 Trre-Chr14 7233314 7235644 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00850 24 151 Eukaryotic Initiation Factors Gene Family AT1G71770 26.515 8.61e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00850 - - tpra:123896113 172.17