Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00838 ATGGTGGAAAGTGAAGAACAAACATCGATGATGGGATCGAATAGCCAAAATGTGATATCACTTATAAGTCCAAGATTCAAATCTGCTGCTGCTATGGCTGGTTGGGATGAAGAAGCACTTTTACTTGCATCTCTCATTGTTGAAGATACACCTGATAGAGATTCAAAACATAAGAGGCGTTTTGTTTTGAATTCTAAATCTCCACTATCCAATTCATCAAGGAAACGCAGAGCTCAGAGGAATCCTCCACAACCAATTGTTCTTGATCTAGATGATGAAGAAACTCCGAAAAAGGAAAGTGGAAAAAAGAAGAAAGAAAAGATAAATTGTGTTACTGAAGAAAGTAAAGTTAAAGAAAAGGAATTGAGTCAAAAGGGTATTGATGTCAATTCAACTAGTTCTTCTACTCTTCCTTGTATGGATAAGCTGAGAGAAGAGCTTTCATGTGCTATTTGTTTAGAGATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTTTGTAAAAAATGTCTGAGATCTGCTGCAGACAAGTGTGGCAAAAAGTGTCCTAAATGTAGGCAATTGATAAGCAATGGACGATCGTGCACTGTGAACACGGTTCTTTGGAACACAATTCAACTCCTATTTCCTCAAGAAATTGAAGCAAGGAAAGCAGCTGCTGTCGTTGCGAATAATAGACAAGCACCAGCTCAGAATCCAATTCAAGAAACAAGATTTTACAATAATCAAAGGAATAGAAGTATACAACCGTATCCATCGAGTAGGGCTATGAGTTCGAGGAGATATGAAACAACGACAGAGGATGATGAGGATGCTGCATTGGCTAGACTGTTACAAAGAGAAATTGATGGACTAAGCAATCAAAGGGCAACAGTGACAACAAGGGTTTCAAGTGTAAGAGGAAGGACAAGAAGAGGGGTTGTGGCTCAAGATGAAGATGCTGCTTTTGCTCTAAGGTTGCAAAGAGAGGAGTTTATGCATGCTTTTAGGGGGGGTAGCAACAACCAGGAGCAATCATCTTCTTCGTCTACATTAGCTAGATCAAATTTGAGGGCAATGGCAACCAGAGCGATGAATATTCGTATTAGGGATCAAAGGATGTGA 1110 0.3973 MVESEEQTSMMGSNSQNVISLISPRFKSAAAMAGWDEEALLLASLIVEDTPDRDSKHKRRFVLNSKSPLSNSSRKRRAQRNPPQPIVLDLDDEETPKKESGKKKKEKINCVTEESKVKEKELSQKGIDVNSTSSSTLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEIEARKAAAVVANNRQAPAQNPIQETRFYNNQRNRSIQPYPSSRAMSSRRYETTTEDDEDAALARLLQREIDGLSNQRATVTTRVSSVRGRTRRGVVAQDEDAAFALRLQREEFMHAFRGGSNNQEQSSSSSTLARSNLRAMATRAMNIRIRDQRM 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00838 369 ProSitePatterns Zinc finger RING-type signature. 164 173 IPR017907 -
Trre14g00838 369 ProSiteProfiles Zinc finger RING-type profile. 149 188 IPR001841 -
Trre14g00838 369 PANTHER UNCHARACTERIZED 312 361 - -
Trre14g00838 369 MobiDBLite consensus disorder prediction 90 107 - -
Trre14g00838 369 Pfam Zinc finger, C3HC4 type (RING finger) 149 187 IPR018957 GO:0046872
Trre14g00838 369 MobiDBLite consensus disorder prediction 64 79 - -
Trre14g00838 369 MobiDBLite consensus disorder prediction 248 271 - -
Trre14g00838 369 MobiDBLite consensus disorder prediction 332 351 - -
Trre14g00838 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 218 IPR013083 -
Trre14g00838 369 MobiDBLite consensus disorder prediction 248 262 - -
Trre14g00838 369 SUPERFAMILY RING/U-box 141 212 - -
Trre14g00838 369 MobiDBLite consensus disorder prediction 53 107 - -
Trre14g00838 369 MobiDBLite consensus disorder prediction 333 351 - -
Trre14g00838 369 SMART ring_2 149 187 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00838 Trre-Chr14 6876047 6878130 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00838 141 191 C2H2 Transcription Factor Family AT5G39550 44.231 5.48e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00838 - - gmx:102666585 399.438