Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00837 ATGCTTTTTAATTGGGTTTTCAAACAAACTTCTAATCCTCCTTCTATTGATCAACTCAAACAAGCTTCTGATCCTCCTTGTATTGATCAAATCAAACAAACTTCTGATCTTCCTCGTACTGATCAACTAAGTTGTATTGATCAACTAAAGGAAGAGCTTTTATGTGCAATTTGTTTGGATATATGCTTTAAGCCAAGTACCACTCCTTGTGGTCACAGCTTTTGTAGAAGATGTCTCATATCCGCTATGAAAGCGTGTGGTAAAAAGTGTCCCAAGTGCACGCAAGCCATAAGAATAAGGGACGTTGGTCGATCGCTTACCGTGAACACGGTTCTTTGGAACACAGTTCAGCTCATTTTTCCACAAGAAATTGAAGCAAAGAAAGCATTTCTTGACTCCTTAAATAATCAACAAGCAGCTCAAAGTCAAACCACTTCATCATCAACCAGAGCCAGGAACCTTGGAACCAGAAATCAATGGAGACAATAA 489 0.3885 MLFNWVFKQTSNPPSIDQLKQASDPPCIDQIKQTSDLPRTDQLSCIDQLKEELLCAICLDICFKPSTTPCGHSFCRRCLISAMKACGKKCPKCTQAIRIRDVGRSLTVNTVLWNTVQLIFPQEIEAKKAFLDSLNNQQAAQSQTTSSSTRARNLGTRNQWRQ 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00837 162 ProSitePatterns Zinc finger RING-type signature. 70 79 IPR017907 -
Trre14g00837 162 PANTHER UNCHARACTERIZED 30 146 - -
Trre14g00837 162 Pfam Zinc finger, C3HC4 type (RING finger) 55 93 - -
Trre14g00837 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 127 IPR013083 -
Trre14g00837 162 SMART ring_2 55 93 IPR001841 -
Trre14g00837 162 ProSiteProfiles Zinc finger RING-type profile. 55 94 IPR001841 -
Trre14g00837 162 MobiDBLite consensus disorder prediction 141 162 - -
Trre14g00837 162 SUPERFAMILY RING/U-box 47 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00837 Trre-Chr14 6861897 6863997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00837 41 118 C2H2 Transcription Factor Family AT5G39550 32.911 1.89e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00837 - - lja:Lj1g3v3754810.1 142.124