Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00818 ATGGAATTAGATCCCAGCTTTGAAGAAAAGATTTCTTATCTTTTTGGAGATTATCCTAAAAATTCTTCCATAAAATTAGATATCCCCACAAATGTTCCCTCTGAACTAAATCCTACCTTTTCACATTGCAGCACATTTTTGTACCAAAATTATTGCAATCCATTTAAGGAACATCATCTGAAAGGGTCAAACCATCACTCTAGTTTTTCTACGGTGATTCCTTCCTCCATAGACCCAATCACTATGATCCCAACCCCTTCATATATGGCTATGCACAACAATGGGTCACAAAGAGAATCTACCAGCAGTGCTCAAAATCCAATTATGTTTGCACCAAACAATAACAAAATGAAAGTTATGTATGGTCGCCTAAATACTAGCAAAGGAGTTTGGGATTTATCCAAAAAAAATCTCTTTCAATATGGTGAAACTTTACAACCTCAGCCGGATCCCTCTTTACCACCATCCCAATTTTATGATGCACATCCATCTCTATTAGTTAAGTCTAGACATCAAGGAGATCTTTCATCTGAGGGTGGGATTGAAAAGAAACGCCAAGAAAATGAAGAAGGACTCGTCCTTAGTGACCAGAAGCGGAAAAAGAGGAGTCAAAAGAATAGTAAAATTCAACACAAGGATCCTAATACAATCAAAGGCCAATGGACTGCAGATGAGAATAGCAATCTTATCGAATTGGTGGATATCTTTGGATATGATTGGGCTGAGATAGCTACGTTTATGAATGGTAGGAGCGGCAAACAATGCAGGGAGAGATGGTATAACCATCTAGGACCAAAAATTAAGAAATCGTCATGGAGTGAGGAGGAGGAAAAAATACTGATTGAAGCTCATAAGAAAGTTGGAAACAAGTGGACTGCAATTGCAAGAATGTTACCCGGTCGCACTGATAATGCCATTAAGAACCACTGGAACACCGCTATGCGCAGCCAAACCCGCGAGACCAAAAAGAATCGGTGGAATAGTTTTAAAAAAACAATACTTCATAAGTACATTGATGAAATCATTTCTACTAAGGAAGTTGAAAAAGAGGATGATGAAGATTTAGCTACTCGAGAGGATGAACAACCTGGTGGTTCCGAGGAAATGATGTTCGATAATGGTGATGATGGAATGACAAGTTGGTCTAGGACAACAGATTATGAGTTTGGAAATGGAATGGAGTTTTTCGTTGAGGTTCCCTTGAAGGAGGAAATGGATTTCATGGAGATGATCATCAATAAAAACCATTAG 1251 0.3845 MELDPSFEEKISYLFGDYPKNSSIKLDIPTNVPSELNPTFSHCSTFLYQNYCNPFKEHHLKGSNHHSSFSTVIPSSIDPITMIPTPSYMAMHNNGSQRESTSSAQNPIMFAPNNNKMKVMYGRLNTSKGVWDLSKKNLFQYGETLQPQPDPSLPPSQFYDAHPSLLVKSRHQGDLSSEGGIEKKRQENEEGLVLSDQKRKKRSQKNSKIQHKDPNTIKGQWTADENSNLIELVDIFGYDWAEIATFMNGRSGKQCRERWYNHLGPKIKKSSWSEEEEKILIEAHKKVGNKWTAIARMLPGRTDNAIKNHWNTAMRSQTRETKKNRWNSFKKTILHKYIDEIISTKEVEKEDDEDLATREDEQPGGSEEMMFDNGDDGMTSWSRTTDYEFGNGMEFFVEVPLKEEMDFMEMIINKNH 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00818 416 Pfam Myb-like DNA-binding domain 218 263 IPR001005 -
Trre14g00818 416 Pfam Myb-like DNA-binding domain 269 312 IPR001005 -
Trre14g00818 416 MobiDBLite consensus disorder prediction 175 200 - -
Trre14g00818 416 CDD SANT 221 263 IPR001005 -
Trre14g00818 416 SMART sant 268 316 IPR001005 -
Trre14g00818 416 SMART sant 217 265 IPR001005 -
Trre14g00818 416 FunFam Transcriptional activator Myb isoform A 217 269 - -
Trre14g00818 416 ProSiteProfiles Myb-like domain profile. 213 263 IPR001005 -
Trre14g00818 416 CDD SANT 271 312 IPR001005 -
Trre14g00818 416 ProSiteProfiles Myb-like domain profile. 264 314 IPR001005 -
Trre14g00818 416 Gene3D - 209 269 - -
Trre14g00818 416 SUPERFAMILY Homeodomain-like 206 260 IPR009057 -
Trre14g00818 416 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 264 318 IPR017930 -
Trre14g00818 416 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 213 263 IPR017930 -
Trre14g00818 416 PANTHER MYB PROTEIN-RELATED 218 332 - -
Trre14g00818 416 MobiDBLite consensus disorder prediction 348 383 - -
Trre14g00818 416 Gene3D - 271 315 - -
Trre14g00818 416 SUPERFAMILY Homeodomain-like 242 320 IPR009057 -
Trre14g00818 416 MobiDBLite consensus disorder prediction 170 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00818 Trre-Chr14 6646301 6650036 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00818 209 416 MYB Transcription Factor Family AT5G11050 39.810 2.60e-40 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre14g00818 Myb_DNA-binding 6.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00818 K09422 - tpra:123892067 559.681