Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00753 ATGTCCTCCTCATTCTCCGTCATTTCAAATTTATCTCCTTCTTCCCCACACTCCAACATTCACAACTTCCACACCTTCTTCATCTCCAATCACAACAAACCGCCCCAAACCTCTTTTCTCTTTTCCAAATTCTGCCATCATTCCTCTATCTTCCACAACACTCTCGCTGCCAAACGCCTCCGGTTCGCTGCTTCCATTTTACCCGATGCCGATTGGTGGACTTTACCGAAACATCCAGAAGAAGACGATGCAGAACCGACGGCGGCGATGCTCGCTCTCAGACGAATGTTGGATTTGGTTACCGATGAGCGCTGGGTCGCACTTGGAGCTTTCGGGTCTCTTGTCATTGCTGCTCTTTCAGAAATCACCATGCCAAGTATATTAGCAGCATCAATATTTTCAGCACAGAGTGGTGAGACTGTGGTATTCTCTAGGAATGCAATGTTTTTGGTTCTTCTATGTTTTACTTCAGGGATATGCAGTGGTTTGCGAAGTGGCTGCTTTGGAATTTTGAATGTAACCTTGGTAAAGCGTCTACGAGAAAACTTGTATGCAACCATTCTTCTTCAGGACATATCTTATTTTGATAAAGAAAAAGTTGGTACCTTGACAAGCAGGCTCGCCGCAGACTGTCAACGGCTTTCGCATGTTATAGGAAATGATCTTCAGTTGATATTACGCAACACGTTGCAGGGAACAGGAGCGATAATTAATTTACTGGCTTTATCTTGGCCTCTAGCATTATCTGCACTGATGATTTGTTCTGTGTTATCTGCAATTTTCCTGGTTTATGGCAGGTATCAAAGAAAAGCAGCAAAGTTAACCCAAGATTTCACAGCTTGTGCCAATGACGTAGCTCAGGAGACACTTTCTTTGATAAGAACTGTCCGGGTGTATGGAACTGGAAAAGAAGAATTTGAAAGGTACAATCAGTGGCTACAAAAATTAGCATTTATTAGCGTTCGAGAGAGTGTGGGTAATGGTTTCTGGAACCTGAGCTTTAACACTCTTTATCGGTCAACTCAGATAATTGCAGTGATTTTTGGAGGAATGTCTGTTCTCAGTTGCCGTGTAACTGCTGAGCAACTTACTAAGTATGTATTATACTGTGAGTGGTTGATTTATGCTGCTTGGAGGGTGACAAACAGCTTATCATCATTACTCCAGTCCATTGGAGCATCTGAACAAATTTTCCAAATGATGAATCTTTTGCCCTGTGACCAATTCTTAGTGAAAGGAATTAAATTGCAGAGGTTAATGGGCCATATTCAGTTTGTAAATGTATCATTTCATTATCCAGCAAGGAGTATGATACCTGTTCTAGATCACTTAAACTTCTCTGTAAAACCAAATCAAGTCATTGCCATTGTTGGTCTGAGTGGTAGTGGAAAGAGTACATTAATCAACCTTTTACTTCGTCTCTATGAGCCTAGTAGCGGCCAGATATGTATTGATGGTATCCCTCTGAAGAAGTTGGATATCAGGTGGCTGAGGCAGAACATCGGATATGTTTCACAGGAACCGAATATCTTTCACATGGACATAAAGTCAAACATAAAATATGGTTGTCCTAGGAACATAAATCAAGAAGATGTTGAACAGGCAGCAAAACTGGCATACGCCCATGACTTTATTTCATCACTTCCTAATGGCTATGAAACCCTTGTTGATGACAATGCGCTTAGCGGGGGACAAAAACAGCGAATCGCCATTGCAAGGGCCATTCTTAGGGACCCAGTTATTATGATTCTTGACGAACCAACCAGCGCCTTGGATTCTGAAAGTGAGCATTACATCAAGGAGGTATTGTATGCATTCAAAAATGAATCTAAATCAAGAACCGTCATTATCATAGCACATAGGCTTTCTACTGTAAAAGCTGCTGACAGGATCATTGTTATGGATAATGGTCAGATTATTGAGATGGGTAACCATGAAGAGCTTATAGTCAAGAATGGGCTCTATGCGAAGTTAAATAAATTTCAAGCAGATATTGTAACTTGA 2004 0.4127 MSSSFSVISNLSPSSPHSNIHNFHTFFISNHNKPPQTSFLFSKFCHHSSIFHNTLAAKRLRFAASILPDADWWTLPKHPEEDDAEPTAAMLALRRMLDLVTDERWVALGAFGSLVIAALSEITMPSILAASIFSAQSGETVVFSRNAMFLVLLCFTSGICSGLRSGCFGILNVTLVKRLRENLYATILLQDISYFDKEKVGTLTSRLAADCQRLSHVIGNDLQLILRNTLQGTGAIINLLALSWPLALSALMICSVLSAIFLVYGRYQRKAAKLTQDFTACANDVAQETLSLIRTVRVYGTGKEEFERYNQWLQKLAFISVRESVGNGFWNLSFNTLYRSTQIIAVIFGGMSVLSCRVTAEQLTKYVLYCEWLIYAAWRVTNSLSSLLQSIGASEQIFQMMNLLPCDQFLVKGIKLQRLMGHIQFVNVSFHYPARSMIPVLDHLNFSVKPNQVIAIVGLSGSGKSTLINLLLRLYEPSSGQICIDGIPLKKLDIRWLRQNIGYVSQEPNIFHMDIKSNIKYGCPRNINQEDVEQAAKLAYAHDFISSLPNGYETLVDDNALSGGQKQRIAIARAILRDPVIMILDEPTSALDSESEHYIKEVLYAFKNESKSRTVIIIAHRLSTVKAADRIIVMDNGQIIEMGNHEELIVKNGLYAKLNKFQADIVT 667
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00753 667 PANTHER ABC TRANSPORTER B FAMILY 85 659 IPR039421 -
Trre14g00753 667 SMART AAA_5 450 638 IPR003593 GO:0016887
Trre14g00753 667 Pfam ABC transporter transmembrane region 113 371 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre14g00753 667 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 108 389 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre14g00753 667 Pfam ABC transporter 441 589 IPR003439 GO:0005524
Trre14g00753 667 FunFam Multidrug ABC transporter ATP-binding protein 415 665 - -
Trre14g00753 667 ProSitePatterns ABC transporters family signature. 561 575 IPR017871 GO:0005524|GO:0016887
Trre14g00753 667 Gene3D ABC transporter type 1, transmembrane domain 88 406 IPR036640 GO:0005524|GO:0016020
Trre14g00753 667 SUPERFAMILY ABC transporter transmembrane region 94 405 IPR036640 GO:0005524|GO:0016020
Trre14g00753 667 CDD ABC_6TM_TAP 110 397 - -
Trre14g00753 667 Gene3D - 413 665 IPR027417 -
Trre14g00753 667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 662 IPR027417 -
Trre14g00753 667 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 423 661 IPR003439 GO:0005524
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre14g00753 Trre-Chr14 6226882 6233572 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00753 178 662 Calmodulin-binding Proteins AT2G36910 34.073 1.36e-73 256