Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00747 ATGGCATCTTCTTCAAGCTGCTACTCAAATTCACCATGTGCTGCCTGCAAGTTTTTGAGAAGGAAGTGCATGCCAGATTGCATATTTGCTCCATATTTTCCACCAGAAGAACCACAAAAATTTGCAAATGTTCACAAAATATTTGGTGCAAGTAATGTAAGTAAACTTTTGAATGAAGTTCAAGCACATCAAAGAGAAGATGCAGTGAATTCTCTTGCATATGAAGCTGAAGCAAGGATTAAAGATCCTGTTTATGGTTGTGTTGGTGCTATTTCAGTCCTACAAAGACAAGTTATTAGACTCCAAAAAGAACTTGATGCTACAAATGCTGATTTGATTCGTTATAGTACTTGCACTGATCATATACTTCCAAATAATCATCATCAAGATCACCAAGTTACAAGAATTCATGAAGATGGAGGAGGTTCTTCTCTTGGTCATCAATCTCCTTCTACAACATTTTACTATCCTTCTCCTTGGAACAATGATCCACTTGGAGATGGTAATTTTCACACAGGAGGAGGAGGTGACAATATATAA 540 0.3685 MASSSSCYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQAHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYSTCTDHILPNNHHQDHQVTRIHEDGGGSSLGHQSPSTTFYYPSPWNNDPLGDGNFHTGGGGDNI 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00747 179 Coils Coil 91 111 - -
Trre14g00747 179 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Trre14g00747 179 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 132 - -
Trre14g00747 179 Pfam Lateral organ boundaries (LOB) domain 12 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00747 Trre-Chr14 6181258 6181797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00747 6 118 AS2 family AT3G27650 83.186 5.87e-69 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre14g00747 LOB 2.3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00747 - - gmx:100788656 254.603