Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00684 ATGGATGTTGAAAATCAGAATCCGGATTCAGAGTTTCCGTTCTGGAAACCCATTCCTCGCAGATTCAAACCTGATTCCCCTTTCTTCGCTATCGGTAACCTCGAACGAGAACTTCTTGTTAAACAGGTTGCTTTGGAATTCACAGAAGAAAAGGAAACACTTGAGGATTTGATACAAGAGGATGAAAGGGAAGTTTTCTGTCCCATTGTTGGGTGTGGATCGCGTTTGGCCTCAATGGAGGACTTTGAAAATCACTATAATGCAAGACATACTGCATCCTGTTCTGTGTGTTCTAGAGTCTACCCGACATCACGTTTGCTTAGCATTCATTTATCAGAAGCTCATGATTCTTTCTTTCAGGCAAAAGTTGCACGTGGCTATGACATGTACGAATGCTTAGTGGAAGGTTGTGGTTTGAAATTCAAAAGCTACAAAAGTAGGCATCAGCATCTAGTCGACAAGCATAAATTCCCAACGTCGTTCGAGTTTTTCAAGAAGGCTCTGCCTTCAAAGAAACACAGGATGAAGACTCAACGCAAAAAACCTTCTCATAAGGAGGATACTTCAGGAATGATGGAAGTGGAAAATGCAGCCATAGATGACCTTGTTTCAGCAGTCTCTAAATTGAATACTTCGGACTCGACTCCTTCATCTATCAGCTTTGGTCGCCGTAACACCAAAGGCATGACATTTGTTCCGCGAGCTGTTCAGCGTGGGAAGGGATCAAACTCAGATTCACCTGTTACAAAGAGATAA 756 0.4259 MDVENQNPDSEFPFWKPIPRRFKPDSPFFAIGNLERELLVKQVALEFTEEKETLEDLIQEDEREVFCPIVGCGSRLASMEDFENHYNARHTASCSVCSRVYPTSRLLSIHLSEAHDSFFQAKVARGYDMYECLVEGCGLKFKSYKSRHQHLVDKHKFPTSFEFFKKALPSKKHRMKTQRKKPSHKEDTSGMMEVENAAIDDLVSAVSKLNTSDSTPSSISFGRRNTKGMTFVPRAVQRGKGSNSDSPVTKR 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00684 251 ProSitePatterns Zinc finger C2H2 type domain signature. 94 115 IPR013087 -
Trre14g00684 251 MobiDBLite consensus disorder prediction 172 191 - -
Trre14g00684 251 ProSitePatterns Zinc finger C2H2 type domain signature. 132 155 IPR013087 -
Trre14g00684 251 MobiDBLite consensus disorder prediction 209 251 - -
Trre14g00684 251 Coils Coil 40 64 - -
Trre14g00684 251 PANTHER UNCHARACTERIZED 9 239 IPR039258 -
Trre14g00684 251 MobiDBLite consensus disorder prediction 209 225 - -
Trre14g00684 251 SMART c2h2final6 92 115 IPR013087 -
Trre14g00684 251 SMART c2h2final6 130 155 IPR013087 -
Trre14g00684 251 SMART c2h2final6 65 90 IPR013087 -
Trre14g00684 251 MobiDBLite consensus disorder prediction 237 251 - -
Trre14g00684 251 ProSitePatterns Zinc finger C2H2 type domain signature. 67 90 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00684 Trre-Chr14 5706470 5708953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00684 12 246 C2H2 Transcription Factor Family AT5G14140 66.803 9.21e-116 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre14g00684 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00684 - - gmx:100819557 406.371