Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00674 ATGTCTCCATTTCTTCTTTTTGGATTCATTATTGATCCTAATAGGAGAATGAAACATGCTTACTCATGCAATTTTTGTAGCAGAAAATTCATTACTCCACAAGCATTAGGTGGTCATCAAAATTGCCACAAATGGGAGAAAAACTTCAAAAAAAGAATTGAAGATATGAACAATGATTGGATAAATAATGCAAATGGTAATCAAGGGGTGGTAAGTCAAAACACCATCATTCCATACCATGGTGGGTATGGATATGACAATATGATCCAAGGCTTAGTGAGTCAACAAATTACTATGACTAAAGTTGACTATGGTTTAGTTTCAAATGGAGATGCTGATAATGATGATGCTGAACATGAAGACAAAGAGATTGAGGAGGAAGAAGAATCCAAGATTGACTTGACCCTTAAGCTTTAA 417 0.3453 MSPFLLFGFIIDPNRRMKHAYSCNFCSRKFITPQALGGHQNCHKWEKNFKKRIEDMNNDWINNANGNQGVVSQNTIIPYHGGYGYDNMIQGLVSQQITMTKVDYGLVSNGDADNDDAEHEDKEIEEEEESKIDLTLKL 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00674 138 ProSitePatterns Zinc finger C2H2 type domain signature. 23 43 IPR013087 -
Trre14g00674 138 MobiDBLite consensus disorder prediction 114 128 - -
Trre14g00674 138 ProSiteProfiles Zinc finger C2H2 type domain profile. 21 48 IPR013087 -
Trre14g00674 138 Gene3D Classic Zinc Finger 7 74 - -
Trre14g00674 138 SUPERFAMILY beta-beta-alpha zinc fingers 19 50 IPR036236 -
Trre14g00674 138 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 19 84 IPR044246 GO:0009788
Trre14g00674 138 MobiDBLite consensus disorder prediction 108 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00674 Trre-Chr14 5572967 5573383 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00674 20 138 C2H2 Transcription Factor Family AT5G57520 28.226 2.99e-11 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00674 - - mtr:120577076 130.568