Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00672 ATGTGCAACACTAAGCGTGATCCAAACAAGGGAAAAGAGAAAGTGAATGAAGAACCAATAGTCAATTTCAAGACTATGGAGATTCAAAAGAATGAGAACAAGCGAAAGGCGATTGTTCTAGCTGAACCTGATGTTCAAGCAAAGAATTCAAAGAGTCCTAATAATGGTGATGCTGGTGAAGAAGAATCATCAAATTCATCCAAAAAAACTTCTCCATTTATTCTTTTTGGATTCATTATTGATCCAAATAATGGAATTAAACATGCTTACTCATGCAATTTTTGTAGCCGAAAATTCATTAATCCACAAGCATTAGGTGGCCATCAAAATTGCCACAAATTGGAGAGAAGACTCAAACAAAGGATTGATGATATGAAAATTGATTGGATAAATTATTCAAATGGTAATTCAAATGGTCAAATGAAAATTGACTGTGGTTCAGTTTCAAATGTGAGCGCTAGTGATGTTGTTGATCATGATGACAAGGAGACTCGGGAGAAGGAAGGATCCAAGATTGATTTGACCCTTAAGCTTTAA 537 0.3501 MCNTKRDPNKGKEKVNEEPIVNFKTMEIQKNENKRKAIVLAEPDVQAKNSKSPNNGDAGEEESSNSSKKTSPFILFGFIIDPNNGIKHAYSCNFCSRKFINPQALGGHQNCHKLERRLKQRIDDMKIDWINYSNGNSNGQMKIDCGSVSNVSASDVVDHDDKETREKEGSKIDLTLKL 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00672 178 MobiDBLite consensus disorder prediction 47 68 - -
Trre14g00672 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Trre14g00672 178 MobiDBLite consensus disorder prediction 155 178 - -
Trre14g00672 178 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Trre14g00672 178 SUPERFAMILY beta-beta-alpha zinc fingers 88 117 IPR036236 -
Trre14g00672 178 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 11 124 IPR044246 GO:0009788
Trre14g00672 178 Gene3D Classic Zinc Finger 63 143 - -
Trre14g00672 178 MobiDBLite consensus disorder prediction 32 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00672 Trre-Chr14 5559965 5560501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00672 87 138 C2H2 Transcription Factor Family AT1G66140 48.077 1.45e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00672 - - psat:127129112 158.303