Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00667 ATGGATTGGGATTGGAAAGAGTTTGCTTGGGATCCATCTGGATTGGAAGATTTGAAAAATGAAGGAGATTCTGTTGATTTGAGGCTTGGTGAAGCTTCTGATTCATTGGAAAAATCAGTTCAAGATACAGGAAAAGAAGATTCAAAAGCTGTTTCGTCGTTTTCAGGATCATCAAAAAGATTGCGTTTGCAAAATGGATCGCAGAATATGATTTGCTCGGTTGATGGATGTAACGCCGATCTTAGTGATTGTAGAGAGTATCATAAGCGTCATAGGGTTTGCGAAAAGCACTCGAAGACGCCGGTTGTTTTGGTTGGAGGTAAGCAGCAGAGGTTCTGCCAACAATGCAGCAGGTTTCATTCACTTACGGAGTTTGATGACGTTAAGAGGAGTTGCAGGAAGCGTCTTGACGGACATAATAAGCGAAGGAGGAAACCTCAGCCACCTTCTCTTTTCATGGCTGCTGAGAAATTCATGTACAATTACAAAGGACCTAGAATCCTGCACTTTGGTAGCCCTCAAGCATATGTGAATGTGAATCCTATTATGAGAAACATTTGGCCTGCCACTTCCATAACTGAAGCTGAATCCGGTTACGATAATCACCGATTTTTGTATCGAATCGACAAACATAAACAGGATAAAGGACATCCTCATTGGCAAGAAATTCTCCCTAAATCCGGCGATGTTAACAAAGCTGCGCCTGGAATTCCTATCGACCAACCTATTCGAGGTGCTGATGATTCATCAGCAGGTGGAAAAGGCGGTAGGAAGGTCTCTTCTGATAGCAAGCCTGAATCTTTTGACTCGGGTTGTGCTCTCTATCTTCTGTCAACACTTCGAACACAAAGTTCAGAGTTGAGTTTGATGCAGTCAAGCATCAACAACAGTCCAACAGAATCTTCGTCTGGAACGGTGCATTTCGATGCGATGAATGAGTACTCATTCTCAGGAAAGGCGAAAGATAAGCCTAATAATGGTTCAGTTTTTGTTCTCGATGGAAACACAACAAACCTTCATTGCAATGGGATGCTGCAAATGGGGCCTAATAGTTTGGTCGAAAATGAAAACTCGCTGACACTTCCATTTTTCTGGGAGTAA 1101 0.426 MDWDWKEFAWDPSGLEDLKNEGDSVDLRLGEASDSLEKSVQDTGKEDSKAVSSFSGSSKRLRLQNGSQNMICSVDGCNADLSDCREYHKRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLTEFDDVKRSCRKRLDGHNKRRRKPQPPSLFMAAEKFMYNYKGPRILHFGSPQAYVNVNPIMRNIWPATSITEAESGYDNHRFLYRIDKHKQDKGHPHWQEILPKSGDVNKAAPGIPIDQPIRGADDSSAGGKGGRKVSSDSKPESFDSGCALYLLSTLRTQSSELSLMQSSINNSPTESSSGTVHFDAMNEYSFSGKAKDKPNNGSVFVLDGNTTNLHCNGMLQMGPNSLVENENSLTLPFFWE 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00667 366 Pfam SBP domain 72 145 IPR004333 GO:0003677
Trre14g00667 366 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 32 303 IPR044817 GO:0003677
Trre14g00667 366 Gene3D - 63 133 IPR036893 GO:0003677|GO:0005634
Trre14g00667 366 MobiDBLite consensus disorder prediction 36 58 - -
Trre14g00667 366 MobiDBLite consensus disorder prediction 226 267 - -
Trre14g00667 366 ProSiteProfiles Zinc finger SBP-type profile. 69 146 IPR004333 GO:0003677
Trre14g00667 366 SUPERFAMILY SBT domain 70 151 IPR036893 GO:0003677|GO:0005634
Trre14g00667 366 FunFam Squamosa promoter-binding-like protein 14 63 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00667 Trre-Chr14 5503402 5505915 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00667 68 195 SBP-box Gene Family AT5G50670 53.125 5.32e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre14g00667 SBP 4.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00667 - - lja:Lj1g3v3847150.1 536.954