Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00643 ATGGCATCCCAATCCTCTAGCAGCTCTTCCAATGTACAACATCTTAACAAACAAAATCAACTTCCAAACTCCAATTCTGTAGTGCAAGAGCACAATTTTTTCAGCCATGTCCAAGTTGGTTCTTCATCTGCATTTCCTAATAACAATGAAGGAAAAGATGAGAACAACAACGTAAAGAAAAATTCTGATTCAAAGATTTATTCATGCAATTACTGCAAGGGTCAATATTCTTCTTTACAAGCATTAGGAGGGCACCAAAAAGCCCACAAAGCAGAACGTGTGTTACAAATGCAACTAATCAAACAAAAGCCAAATGGAGTTAGAATGGAATCATTGATTGAAAAATCACCTTATATTAACCGTAGAAATGGTCATGGTACTTTTACACCTTATAACTATAGGTCACTTGGGGTTAGAATGGAATCGATGATTCAAATAGAATCACCTTGTATTAGCCCTAGGATTGGTAATGGTACTTTCGGTTTGTATGATATATTAAACCCTTCTCTTCTTAGCTTGAGAAATAATATTGAGGGAAGTAATGGTGGGGTTGTAAGTCTAGGTATTGGTGGTGCAACTACTTCTACAAATATTGTGGCTCCTACTTCTACCATGGATGACATTCGCAAGTTAAAGTCAAGTGATTTTGATTCATCTGGGCTTGATCTATCACTTAAGCTTTAA 684 0.3626 MASQSSSSSSNVQHLNKQNQLPNSNSVVQEHNFFSHVQVGSSSAFPNNNEGKDENNNVKKNSDSKIYSCNYCKGQYSSLQALGGHQKAHKAERVLQMQLIKQKPNGVRMESLIEKSPYINRRNGHGTFTPYNYRSLGVRMESMIQIESPCISPRIGNGTFGLYDILNPSLLSLRNNIEGSNGGVVSLGIGGATTSTNIVAPTSTMDDIRKLKSSDFDSSGLDLSLKL 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00643 227 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 94 IPR013087 -
Trre14g00643 227 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 13 227 IPR044246 GO:0009788
Trre14g00643 227 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Trre14g00643 227 SUPERFAMILY beta-beta-alpha zinc fingers 63 95 IPR036236 -
Trre14g00643 227 Gene3D Classic Zinc Finger 50 118 - -
Trre14g00643 227 MobiDBLite consensus disorder prediction 40 60 - -
Trre14g00643 227 Pfam C2H2-type zinc finger 67 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00643 Trre-Chr14 5305540 5306313 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00643 48 227 C2H2 Transcription Factor Family AT1G24625 27.136 1.32e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00643 - - tpra:123892087 190.274