Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00640 ATGGCATTTCAATCCTCTAGCAGTTCTTCCACTTCACAAAATCAAGATGGGAACAATCAAAATGAACTTCCAAACTCTAATTCTAGAGTTGGCTCTTCATCTGATTTTCCTAATAACAATGAAGGAAATGATGTGAACAACAATGAAAAGAAAAATTCTGAATCAATGTTGTATTCATGCAAGTATTGCAAGGGCCAATATTCTACTTTACAGGCGTTAGGAGGACACCAGAATGCGCATAAAGCTGAACTTGCATTAAAAAAACAGCAAATTAAACAAAGGTATGAAGGTGGTACTTTAAATTTTGGGCAACCTAGTTTTAACCCTTATTTAAATTATCCTAGGGCTATTCGTTTTACACCTTATAACTATAACTATAGACCACTTGGGGTAAGATTGGATTCATTGTATCAAAAAACACCTCATATTAGCCCTAGGTTTGGTCATGGTGCTTTTAAACCTTACATTAATAATCATAGGCCAAGGATTGGTACTGGTCTTGGTTCTTTGTCTTTGCAAGACATACTTAACCCTTCTCTTGTTACCCTAAGAAATAATATTCAAGGTAGTAATAGTGGGGTTGCAAGTCTAGGTATTGGTGGAGCAAATACTTCAAGAACTGAAGATGAAGTTGGTACAAATAATCCAAATGCTTCTATTCTAATGTTTGGAGAATCTTCAACAAATAATGTGGCTCCTAATTCCACTATGGGTGACATTGATAATTCAAAGTCAAACATTGAAGAAGAACCATCTGATTCCGATTCTTCTGGGCTGGATCTGGAACTCAAGCTTTAA 798 0.3559 MAFQSSSSSSTSQNQDGNNQNELPNSNSRVGSSSDFPNNNEGNDVNNNEKKNSESMLYSCKYCKGQYSTLQALGGHQNAHKAELALKKQQIKQRYEGGTLNFGQPSFNPYLNYPRAIRFTPYNYNYRPLGVRLDSLYQKTPHISPRFGHGAFKPYINNHRPRIGTGLGSLSLQDILNPSLVTLRNNIQGSNSGVASLGIGGANTSRTEDEVGTNNPNASILMFGESSTNNVAPNSTMGDIDNSKSNIEEEPSDSDSSGLDLELKL 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00640 265 MobiDBLite consensus disorder prediction 225 265 - -
Trre14g00640 265 MobiDBLite consensus disorder prediction 243 265 - -
Trre14g00640 265 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Trre14g00640 265 Pfam C2H2-type zinc finger 58 82 - -
Trre14g00640 265 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 11 265 IPR044246 GO:0009788
Trre14g00640 265 MobiDBLite consensus disorder prediction 225 242 - -
Trre14g00640 265 MobiDBLite consensus disorder prediction 1 50 - -
Trre14g00640 265 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Trre14g00640 265 Gene3D Classic Zinc Finger 33 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00640 Trre-Chr14 5291486 5292283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00640 45 139 C2H2 Transcription Factor Family AT5G25160 36.458 2.53e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00640 - - tpra:123892087 243.047