Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00628 ATGTGCAACACTGATCGTGATCCAAACAAGGGAAAAAAGAAAGTGAATGAGAACAATGAAAACAAGAGAAAGGCTATTGTTCTAGTAGAACCTGATGTTGAAACAAAAAATTCAAAGAGTCTCAACAATGGTGATGTTGGTGGAGAAGAATCAACAAATTCATCCAAAGAAATTTCTCCATTTCTTCTTTTTGGATTCATTATTGATCCTAATAAAAGAATTAGACATGCTTACTCATGCAAGTTTTGTAGCCGAAAATTCATTAATCCACAAGCATTAGGTGGCCATCAAAGTTGCCACAAAATGGAAAAAAGACACAAAAAAAGAGCTGAAGATATGAACAATGATAAAGAGACTCGGGAGGAGGAAGAATCCAAGATTGATTTGAGCCTTAAGATTTGA 402 0.3458 MCNTDRDPNKGKKKVNENNENKRKAIVLVEPDVETKNSKSLNNGDVGGEESTNSSKEISPFLLFGFIIDPNKRIRHAYSCKFCSRKFINPQALGGHQSCHKMEKRHKKRAEDMNNDKETREEEESKIDLSLKI 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00628 133 Coils Coil 103 123 - -
Trre14g00628 133 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Trre14g00628 133 PANTHER ZINC FINGER PROTEIN 5 32 112 IPR044299 GO:0010090
Trre14g00628 133 MobiDBLite consensus disorder prediction 35 55 - -
Trre14g00628 133 Gene3D Classic Zinc Finger 64 131 - -
Trre14g00628 133 MobiDBLite consensus disorder prediction 93 133 - -
Trre14g00628 133 MobiDBLite consensus disorder prediction 1 55 - -
Trre14g00628 133 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 105 IPR013087 -
Trre14g00628 133 MobiDBLite consensus disorder prediction 105 133 - -
Trre14g00628 133 MobiDBLite consensus disorder prediction 1 30 - -
Trre14g00628 133 SUPERFAMILY beta-beta-alpha zinc fingers 77 107 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00628 Trre-Chr14 5203194 5203595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00628 77 113 C2H2 Transcription Factor Family AT1G24625 54.054 4.00e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00628 - - psat:127129112 144.821