Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00619 ATGGTTAAGGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTCTTTCCCAGCATTGTTGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGTCAAAAAGATGCATATGTTGGTGATGAGGCACAATCCAAGCGTGGTATTTTGACTCTTAAATACCCCATTGAACATGGAATTGTTAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTATAATGAGCTTCGTGTTGCCCCAGAAGAGCACCCAGTTCTGCTAACTGAGGCTCCTCTCAACCCTAAGGCTAATCGTGAGAAGATGACCCAAATCATGTTTGAGACCTTCAATACCCCTGCTATGTATGTAGCTATCCAGGCCGTTCTTTCACTGTACGCTAGTGGTCGTACCACGGGTATTGTGTTGGATTCTGGTGATGGTGTCAGCCACACTGTCCCTATCTATGAGGGTTATGCTCTACCACATGCCATCCTTCGTCTTGATCTTGCTGGTCGTGACCTCACTGATTTCTTGATGAAGATTTTGACTGAACGTGGTTACTCCTTTACCACCTCAGCAGAGCGTGAAATTGTCCGTGATGTGAAAGAAAAGTTGTCATACATTGCCCTTGACTATGAGCAAGAGCTGGAGACAGCCAGGACCAGCTCTTCTGTCGAGAAGAGCTACGAATTGCCTGATGGGCAGGTGATCACTATTGGAGACGAGCGTTTCAGATGTCCCGAGGTGCTGTTCCAACCTTCCATGATAGGTATGGAAGCAGCAGGAATTCACGAGACCACATACAACTCCATCATGAAGTGTGACGTCGATATCAGGAAAGACCTGTACGGTAACATTGTCCTTTCAGGAGGAACAACTATGTTCCCAGGCATTGCTGATAGAATGAGCAAGGAAATCTCTGCTTTGGCCCCGAGTAGCATGAAGATCAAGGTGGTAGCACCACCTGAGAGAAAATACAGTGTCTGGATTGGTGGTTCCATCTTGGCATCTCTTAGCACCTTCCAGCAGATGTGGATTGCAAAGGCAGAATATGATGAATCTGGTCCATCTATTGTGCACAGAAAGTGCTTCTAG 1083 0.4718 MVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDFLMKILTERGYSFTTSAEREIVRDVKEKLSYIALDYEQELETARTSSSVEKSYELPDGQVITIGDERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00619 360 PANTHER ACTIN 5 353 IPR004000 -
Trre14g00619 360 FunFam Actin, alpha skeletal muscle 240 313 - -
Trre14g00619 360 FunFam Actin, alpha skeletal muscle 314 360 - -
Trre14g00619 360 Gene3D Actin; Chain A, domain 4 165 256 - -
Trre14g00619 360 Pfam Actin 2 360 IPR004000 -
Trre14g00619 360 ProSitePatterns Actins and actin-related proteins signature. 89 101 IPR020902 -
Trre14g00619 360 Gene3D - 1 354 - -
Trre14g00619 360 ProSitePatterns Actins signature 1. 38 48 IPR004001 -
Trre14g00619 360 SUPERFAMILY Actin-like ATPase domain 132 360 IPR043129 -
Trre14g00619 360 CDD NBD_sugar-kinase_HSP70_actin 59 166 - -
Trre14g00619 360 FunFam Actin, alpha skeletal muscle 1 148 - -
Trre14g00619 360 Gene3D - 123 323 - -
Trre14g00619 360 PRINTS Actin signature 34 45 IPR004000 -
Trre14g00619 360 PRINTS Actin signature 100 113 IPR004000 -
Trre14g00619 360 PRINTS Actin signature 221 237 IPR004000 -
Trre14g00619 360 PRINTS Actin signature 11 20 IPR004000 -
Trre14g00619 360 PRINTS Actin signature 125 144 IPR004000 -
Trre14g00619 360 PRINTS Actin signature 46 68 IPR004000 -
Trre14g00619 360 SMART actin_3 1 360 IPR004000 -
Trre14g00619 360 ProSitePatterns Actins signature 2. 341 349 IPR004001 -
Trre14g00619 360 FunFam Actin, muscle 165 256 - -
Trre14g00619 360 SUPERFAMILY Actin-like ATPase domain 2 138 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00619 Trre-Chr14 5126202 5128303 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00619 1 360 Cytoskeleton Gene Families AT3G12110 97.778 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00619 K10355 - gmx:100792119 721.465