Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00592 ATGGTCTTCCCCTCCCTTCCAATCTATCAAGATCCACCCAACTGGTCACCACAGCAAGCAGGAATTGGTATTGGCACTCAAAACTCATCACCTCTGCAGCAGCCATCAGCTTCAACGATAATTGTTACTGTTGAAGCTGATGGCAGCTACCAAGGGTCTATAAGACAAGGATCAATATCCGATCAAGCTAAGATGTCCAAGATACACCAAAATGATGTTGCTGCAACACAAAAATGTCCAAGATGTGAATCAACAAACACAAAGTTTTGCTATTACAACAACTACAATCTTTCACAACCACGCCATTTTTGCAAAACTTGCCGTCGTTATTGGACTAGAGGAGGTGCGCTTAGAAATGTTCCGGTTGGAGGAGGTTGTAGAAGGAATAATAAAAGAAGCAAAGGAAATTCAATATCAAAATCAACTTCAAAACCTAATCGTAATGATCATCGCCAGGTCGGTATCGGTGCTAGTGGTGGTGGTTCTAACTCAGCAAGTGCAAATTCTTCTTCCAATAATGGTTGCACTAATTCTAATGTGAATGTGGGGATCTCTAATTTTCCTACACAATTCCCATTTTTGGCCTCATTGCATCATTATAACAACAATGACTATGTTTCTCAAGGCATTGGTTCTATGGTGGCAAAAAATATTACCAATAGAACTAATACTAGTGTTGAGTTTCAACTTGGTAGTGGTTTTTCAATTGGTAATAGTACTAATGGTGGATCTTTGTTGTTATCAAATGGCATTGGTGAACAATGGAAGTTTCCGAATTCGCTACAAGTCCATCAGCAGCAACAAGAGAATCACCAACAATTCCCTTTCTTGACTAGTTCGGAGCCACAAATTGGATTATTTCAATTTGGTGGAGAAAATAATGACGAACCTCAACGAAATTTTATTCGCTCTAAGGCAACGGATTCTTCAAGTGTTATTAGTATTGGAATGATGCCTCAAGTTAACACAATAAAAATGGAAGAAAATAATTGTCAAGGGTTGAGTTTGTCAAAAAATCTCTTGAGTGGTTCAGAAAATAGTAATGATCTACTTTGGAATGGAAATGGAAGTGGTAATGCAAATGCATGGAATGAATCTCCTAGTTTCACTCCATCACCAAGTCAATTGTTATGA 1134 0.3836 MVFPSLPIYQDPPNWSPQQAGIGIGTQNSSPLQQPSASTIIVTVEADGSYQGSIRQGSISDQAKMSKIHQNDVAATQKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKRSKGNSISKSTSKPNRNDHRQVGIGASGGGSNSASANSSSNNGCTNSNVNVGISNFPTQFPFLASLHHYNNNDYVSQGIGSMVAKNITNRTNTSVEFQLGSGFSIGNSTNGGSLLLSNGIGEQWKFPNSLQVHQQQQENHQQFPFLTSSEPQIGLFQFGGENNDEPQRNFIRSKATDSSSVISIGMMPQVNTIKMEENNCQGLSLSKNLLSGSENSNDLLWNGNGSGNANAWNESPSFTPSPSQLL 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00592 377 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
Trre14g00592 377 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
Trre14g00592 377 MobiDBLite consensus disorder prediction 12 35 - -
Trre14g00592 377 MobiDBLite consensus disorder prediction 121 172 - -
Trre14g00592 377 MobiDBLite consensus disorder prediction 358 377 - -
Trre14g00592 377 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677|GO:0006355
Trre14g00592 377 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 67 274 IPR045174 GO:0003700|GO:0006355
Trre14g00592 377 MobiDBLite consensus disorder prediction 157 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00592 Trre-Chr14 4757107 4758566 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00592 1 134 C2C2-Dof Transcription Factor Family AT2G37590 49.333 6.42e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre14g00592 zf-Dof 2.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00592 - - cam:101502096 495.738