Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00576 ATGGCCGCCCCCGCCGGCATGGACATGTCACTAGATGAACTCATCAACAAATCAACCGCTCGCCACAAAAACAACGCCAGTCACGGACCAAACCGCCACCTCACCGTTCGTAATCCGGTCAGATTGATGCCGTACTCCGTTTCTCAGCCTCAGGTGGCGAGAGAAGAAAGGCGAAGAAGTAGCGTTGATGTTTCAGAAATGGTTTTAGATCATGGTTCTGTTCAACCTAAATCTATCACCAAACTTTATCTTTCTAACTTGGATGAAAGGGTTTCCAATGAAGACATTCATCTGTTGTTCTCAGAAGAGGGTGAGTTGGAAAGATATTCCATTCACTATGATCAGTTTGGGAGATCAAAAGGAACAGCAGAAGTTGTCTTTACAAGGCAGTCTGATGCTTTAGCAGCCCTCAAGAGGTACAACAATATGAGGCTTGATGGAAAGGTATTGCAAATTGAGATTATTGGAACAAGTTTGGTTACTACTGCTGCCGCCACAACACCTCTTGATCAAAGTAGCTTATTGGGAAGACCAAATGATTGCTTTGTGAGGTGTGGAATTCCGATTCCTGGTCTTGTGAACTCTGGAACAAGTTTGGTTACTCATGTTGGTATGCCTCCTGCTCCTGCTCTTGGTCGAAGTAGCTTACTGGGAAGACCAAGTGATGTCTTTGTAAGGGAAGAAAGAAAGATTAATAACTTTGCATATGGCCATCTTCCAAGAGCAAAGGTCCAGACACGAAAGGCGTCTTTTAAAGATACTGGTCATGGCTTTGAGAGGTATCGCCGCCGTGTAGAAGCAAAACGCCGTGTTCCAAGGGTGTCCGTTGAAGATCTTGATGAAGACTTGGAGAAGTATCGCTCAGAGGCTAAGCAGATATGCAACAAAAAATGA 894 0.4474 MAAPAGMDMSLDELINKSTARHKNNASHGPNRHLTVRNPVRLMPYSVSQPQVAREERRRSSVDVSEMVLDHGSVQPKSITKLYLSNLDERVSNEDIHLLFSEEGELERYSIHYDQFGRSKGTAEVVFTRQSDALAALKRYNNMRLDGKVLQIEIIGTSLVTTAAATTPLDQSSLLGRPNDCFVRCGIPIPGLVNSGTSLVTHVGMPPAPALGRSSLLGRPSDVFVREERKINNFAYGHLPRAKVQTRKASFKDTGHGFERYRRRVEAKRRVPRVSVEDLDEDLEKYRSEAKQICNKK 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00576 297 Coils Coil 276 296 - -
Trre14g00576 297 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 7 288 - -
Trre14g00576 297 SMART rrm1_1 81 153 IPR000504 GO:0003723
Trre14g00576 297 SUPERFAMILY RNA-binding domain, RBD 45 154 IPR035979 GO:0003676
Trre14g00576 297 Gene3D - 73 156 IPR012677 -
Trre14g00576 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 157 IPR000504 GO:0003723
Trre14g00576 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 150 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00576 Trre-Chr14 4657718 4660393 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00576 82 154 Eukaryotic Initiation Factors Gene Family AT2G23350 34.247 1.68e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00576 K12881 - gmx:100785926 196.438