Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00560 ATGCCAATCTATAGAATTGCCATTGGATCTCCTGGAGAAGCTGGTCAACCTGATGCAATTAGAGCTGCATTTGCTGAATTCTTCTCCATGCTTATTTTTGTTTTTGCTGGTCAAGGCTCTGGCATGGCTTATAGCAAGCTTACAAATAATGGACCTGCAACACCTGCCGGTCTCATAGCTGCATCACTATCTCATGCATTTGGACTATTTGTTGCTGTTTCTGTGGGAGCAAACATCTCTGGTGGTCATGTCAACCCTGCAGTCACATTTGGTGCCTTCATTGGAGGAAACATTACACTTTTGAGAAGTATTTTATATTGGATTGCACAGTTACTTGGTTCAGTTGTTGCTTGTATTCTTCTCAAATCTGCTACCGGTGGAATGGAGACATCAGCTTTTGCTTTATCTTCAAATGTATCAGTATGGAATGCACTAGTTTTTGAAATTGTGATGACATTTGGATTGGTATACACAGTTTATGCAACAGCAGTAGATCCAAAGAAAGGGAATATAGGAATTATTGCTCCACTTGCAATTGGAATTATTGTCGGTGCAAATATCTTAGCTGGTGGAGCATTTGATGGTGCATCAATGAATCCAGCTGTGTCTTTTGGGCCTGCTGTTGTTAGTTGGACATGGACACATCATTGGGTCTATTGGGTTGGCCCATTTATTGGTGCAGCAATTGCAGCTATAATTTATGATAATATCTTCATTGGTGAGGATGGTCATGAATCTCTCAGTGATTTCTAG 753 0.4064 MPIYRIAIGSPGEAGQPDAIRAAFAEFFSMLIFVFAGQGSGMAYSKLTNNGPATPAGLIAASLSHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRSILYWIAQLLGSVVACILLKSATGGMETSAFALSSNVSVWNALVFEIVMTFGLVYTVYATAVDPKKGNIGIIAPLAIGIIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTHHWVYWVGPFIGAAIAAIIYDNIFIGEDGHESLSDF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00560 250 PANTHER AQUAPORIN-8 6 246 IPR034294 -
Trre14g00560 250 FunFam Probable aquaporin TIP1-1 4 249 - -
Trre14g00560 250 SUPERFAMILY Aquaporin-like 17 239 IPR023271 -
Trre14g00560 250 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre14g00560 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre14g00560 250 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre14g00560 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre14g00560 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre14g00560 250 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre14g00560 250 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre14g00560 250 Pfam Major intrinsic protein 16 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre14g00560 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Trre14g00560 250 Gene3D Glycerol uptake facilitator protein. 4 249 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00560 Trre-Chr14 4563880 4565699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00560 1 250 Major Intrinsic Protein MIP AT4G01470 85.714 2.34e-154 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00560 K09873 - gmx:100788583 437.958