Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00555 ATGGTGGGTAACGACGATGCTCGAGCTCCATGCCACCTTTCAAATTCCCGGAAAATGTTTTGGCGCTCTGCTTCGTGGTCTTCCGCTCGTTCCTCCGCCGCAAACCCTTCCGGAGAATCCGAATCGAATTTCTCAGATCCCAATTCTGGTGTTGAGAATACCAACCGGAGATTCCCTCCGCCGCCGTTGACGCCTAGGTCGCAGCAAAATTGTAAGGCACGGTCGTCGTGTTTGCCGCCTCTTCAACCGCTTTCGATTGCTCGCCGGAGTTTGGATGAGTGGCCGAAAGCGAGTTCCGACGATATCGGGGAGTGGCCACAACCACCTATTACTCCTGGTGGACGAGGTAATGGTAGTAGCAATAGTATTAGTAATAACAATGGTGAAAGGTTGAAACTTGATTTGTCTACAATTCAGCAGAATAATAATCCTGATAGTAGGAATAATGGTGGACTTGTGAAGAGAGATAAGATTGCTTTTTTTGATAAGGAATGTTCTAAAGTTGCTGAACATGTTTATCTTGGTGGTGATGCTGTTGCTAAAGATAGGGAAATTTTGAAAAGAAATGGGATTACTCATGTTTTGAATTGTGTAGGTTTTGTGTGTCCTGAGTATTTCAAAGCTGATTTTGTGTATAGGACTTTGTGGTTACAAGATAGTCCTAGTGAGGATATTACTAGTATTTTGTATGATGTGTTTGATTATTTTGAGGATGTTAGGGAAAAGAATGGGAGGGTGTTTGTTCATTGTTGTCAAGGGGTGTCTAGGTCGACGTCTCTTGTTATTGCTTATCTTATGTGGAGGGAAGGGCAGAGTTTTGATGATGCTTTTCAGTTTGTGAAGGCGGCGAGAGGTATTGCTGATCCGAATATGGGTTTTGCTTGTCAGTTGTTGCAGTGTCAGAAAAGGGTTCATGCATTCCCTCTTAGTCCTAGCTCTTTGTTGAGAATGTATAGGATTGCTCCTCACTCGCCGTATGATCCTTTGCATCTTGTTCCGAAGATGTTGACGGATCCGTCTTCGTCTGCTTTGGATTCTAGGGGTGCGTTTATTGTGCATATTCCTTCGGCGATATATGTTTGGATTGGTAAGAATTGTGAAGCTATCATGGAAAGGGATGCTAGAGGGGCTGCGGGTCAGATTGTCCGGTATGAGAGAGTGCAAGGATCGGTTATCATGATTAAGGAAGGTGAGGAACCACCTTCTTTTTGGGATTCTTTTTCAAAGTTTTTGCCTTTGATGGACATGAGTGGTGGCAGTAAAGTAGAAAGTAGCAAATCGAGTGTTAAATATTTTCCTGGTCAGAGGAAAGTTGATGCATATGATGTGGATTTTGAAGTTTTCGGAAAAGCTATTGTGGGAGGTTTTGTGCCTCCATTTGCATCATCGGAGAATGAACATGAAACCCATCTTCCTGCAAGAGAGAGTAGTTGGAGTGTTTTAAGGCGGAAAGGTTCCTCTCCTAATGTGAAGGAATTTGTCTCAGCTCCTAAGTTATCCCTCCCACGTGTTTATTCAGATTCCATGTTGTGTATTCATACATCACAAATTCAACAATTTCCATCACCCTCTATGTCGTCAACATCATCAACTTTATCATCATCCTCTTCACCCCCTTTTGTCTCTCCAGATTCCGTTTCTTCTGATTCTAGCACTCACTCAAAGTTTTTGTTAGATTTGTCACCAGATTCCTCCTCTCTAGTTTTTGCTCCTATTCCAGTATCATCATCGTTGTCTAGCTTCTCTAATTTGTCCCTCTCGTCAAATTCTACTTCTCAACAAGCATCTACATGTACAGATATTGATGGTGTCAAGTTATCACATCCATGTTCTCAGTCTGCCTCCTTACCATTGAAAAAACCATCAACTTCCATTGCTGAACGCAGAGGTAGTTTATCCAAGTCTTTGAAGTTGCCGCCTCTAACGAATAATAACACAAAAGTAATAGTAGATAAACCATCAACTATTCGTTCCAGTCGAGAACATGGTGTTCTTGCTAACAACAACTTTAGCTGCGTGCAAGATTCAGACAGTATAGATTATTTGTTTGATTCTACTAACCATGTCAAAGGTGGAGGTACGAACTCAGTTCAACAGTGTGAGGTGGCATCACGCCCAGTCATTGTTGATAGTGCAGGCTGCGAGGAATCATCACTTCTCAGGAACTGTGTTGAGCTTTCGGGAGATAGTTTGTCAAGAGAAGATTTGAACTCTACCTCATCAAAGGAAGCTGATGAGAGTGACTCCTTGCAATGTAGTAAGACACAAACTTTAGTATATCGCTGGCCCAGTTTAGAAAAGATTCAGACTTTCGGTGCAAATCATTTGGGCTCGGAGGCTGCTTTTGTCATATTCTCTCCAAGCATACATATGCATACAGGAAACATTTTTTATATTTGGGTAGGGAGTTCTTTCAAACTGGATGCTTCCCAGGCTCAGTTAGACAGTGATAGACAGTCTGATTTTCTTGGAGCAGTCGATTGGAACCGAATTGGTTGTGATCTCCTTGCTCAGTTTGATTTGCCGAAGGATACAGTCACTAAGATTGTTAAAGAGAATGAAGAACCGCAAGAGTTCCTTGCTTTGCTGAGTTCATTGTAG 2601 0.4241 MVGNDDARAPCHLSNSRKMFWRSASWSSARSSAANPSGESESNFSDPNSGVENTNRRFPPPPLTPRSQQNCKARSSCLPPLQPLSIARRSLDEWPKASSDDIGEWPQPPITPGGRGNGSSNSISNNNGERLKLDLSTIQQNNNPDSRNNGGLVKRDKIAFFDKECSKVAEHVYLGGDAVAKDREILKRNGITHVLNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREKNGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQFVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSPYDPLHLVPKMLTDPSSSALDSRGAFIVHIPSAIYVWIGKNCEAIMERDARGAAGQIVRYERVQGSVIMIKEGEEPPSFWDSFSKFLPLMDMSGGSKVESSKSSVKYFPGQRKVDAYDVDFEVFGKAIVGGFVPPFASSENEHETHLPARESSWSVLRRKGSSPNVKEFVSAPKLSLPRVYSDSMLCIHTSQIQQFPSPSMSSTSSTLSSSSSPPFVSPDSVSSDSSTHSKFLLDLSPDSSSLVFAPIPVSSSLSSFSNLSLSSNSTSQQASTCTDIDGVKLSHPCSQSASLPLKKPSTSIAERRGSLSKSLKLPPLTNNNTKVIVDKPSTIRSSREHGVLANNNFSCVQDSDSIDYLFDSTNHVKGGGTNSVQQCEVASRPVIVDSAGCEESSLLRNCVELSGDSLSREDLNSTSSKEADESDSLQCSKTQTLVYRWPSLEKIQTFGANHLGSEAAFVIFSPSIHMHTGNIFYIWVGSSFKLDASQAQLDSDRQSDFLGAVDWNRIGCDLLAQFDLPKDTVTKIVKENEEPQEFLALLSSL 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00555 866 MobiDBLite consensus disorder prediction 21 79 - -
Trre14g00555 866 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 159 305 IPR029021 -
Trre14g00555 866 MobiDBLite consensus disorder prediction 520 546 - -
Trre14g00555 866 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 223 284 IPR000387 GO:0016311|GO:0016791
Trre14g00555 866 Pfam Dual specificity phosphatase, catalytic domain 172 302 IPR000340 GO:0008138|GO:0016311
Trre14g00555 866 Gene3D Protein tyrosine phosphatase superfamily 138 306 IPR029021 -
Trre14g00555 866 PANTHER MKPA PROTEIN 11 863 - -
Trre14g00555 866 ProSiteProfiles Dual specificity protein phosphatase domain profile. 164 306 IPR020422 GO:0006470|GO:0008138
Trre14g00555 866 ProSitePatterns Tyrosine specific protein phosphatases active site. 248 258 IPR016130 GO:0016311|GO:0016791
Trre14g00555 866 SUPERFAMILY Actin depolymerizing proteins 311 413 - -
Trre14g00555 866 CDD DSP 165 299 - -
Trre14g00555 866 Gene3D Severin 315 411 IPR029006 -
Trre14g00555 866 MobiDBLite consensus disorder prediction 21 55 - -
Trre14g00555 866 SMART dsp_5 164 303 IPR020422 GO:0006470|GO:0008138
Trre14g00555 866 MobiDBLite consensus disorder prediction 92 128 - -
Trre14g00555 866 MobiDBLite consensus disorder prediction 113 128 - -
Trre14g00555 866 SMART VILL_6 313 410 IPR007122 GO:0051015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00555 Trre-Chr14 4535218 4538566 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00555 1 200 Protein tyrosine phosphatase (PTP) family AT3G55270 58.824 4.17e-64 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00555 - - vum:124838930 1166.37