Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g00543 ATGGAGTCGAAAAACGAACCATCGAGTGTAATTTTAAAATTGATGGGACTTGATAAAGTTCCTTCCCAACATCGTCCTGTTAGAAATAGACCGAAAGTGTTATCTGAGGATTACCTGCAGAAAGTTGCTTCTATTAGTCTCAGAATGAAGCGTTCTTCTCATCAGCGTCGCTCTTTTGGAACGAGTACCGGCGAAAAGAAAGAATCCAACAATGTTTTGAAAGTGGTTAAAACAGTAAGTAGTGACGCGAACCATAACGAGTCGCAAATTGTTATGCATGGAGAAGCAGGATTGTATGAAATATCGAGGCTTTCGAAATCTCAGTTGGATCCAAAGGATGTAACTTTCGACTCAAGAATTGTAGTTTCGAAAGTGAATCGTGGAAACGAAGAAAATGGTGAGTTTAAAAGGAACATTAGACGTAAGGTTGGTTTCGGTTATAGCTTTGCCAGAAAAGTGCCAACGACAAAACCTTTTGCTGATAATTGTGGAACTATGACTAAGGATGACTTGTTTCAGAAATATTGGGGTTTAAGTAAGAATGCATCTGAAAATTGGTCGAACCAAAATTCAAAGAATCGAAATATCAACCAGAAGGATTGTTCAGAAGATATGAACCTAAAGGCTAGCAGTGAGAAATCGCCATCTTTTTCCTCATATTTCAATCGTAATGATAGTAACCATACCGAGAATTGTACTGACCTGCATAAGTTGAAGAAGAGATGTTATGGGAATGATTTGTTCGAAAAGGAACATACGCTTTCTCAATTGTCAAGCTCTGACAGTCAGATCTTGCAGCAGACATGCTTAATGAATGAAGGCGTGAAGAACGATAAGCATGAAGACAGTAGCATGTGTAAAAAAGTTGCCATGTCTCTTGATTCATCAATTAATATCTTGGTGTCTGAATCCAAATCAACGGTCTCTGTAATAATGTGCGGGGACAGTGATTCTTCAAGCCATGCTTCAAATCAACAGGAGACATCGGAAATTCGAGAAGATTCTGTTTATTCGCCTTGCACCGAGGCTGACACAGATTCACTTGGTACCTATCAGGGGGCATATGAACCGAGTCCAATTTCAGTTTTGGATTCCACATTTGGCGAAGACATTTCAGTAATCTCCGAATGCGGTGGTGTTGGTGGTGTATATGATTCCTCGGAAGTGGATGACGAAGGACTTGATTTGAATGTTTCAAGCGATGAAGATTGTGAGAAAGAATCAGTACTTGATTTTGACGAGAAGAAAGATATAATAGGGTTATCTAGAACAGAAGAAAGTAGGGACTTCTCCTATGTTGTCGAAGTCTTAACCGAGGCAGGTATATCTAACACAAGCTTGTTCAAAGATTTTTCGACATGGCACTCTGCAGAATGTCCTATTAGCCCTTCTGTCTTCGAAACCCTGGAAAAGAAATTCGGCGAGCAGCAACTTTGGAAAAGATCCGAAAGACGGCTTCTCTTTGACCGTATTAATTTTGGGCTGTTAGATATTCTCCATCCTTCTTTATTTATTCCAATATGGGAAAAGCCTGTGTCGAGAAGAATGAATGTTGAACCAAACCAGAACATGATTGAGGATGAGATGTGGGGGTTGCTTGTTTCACAAGAAAAGAAAGCCGGTAAGGAGTCAGCGGACAATATGCTTGGAGGGGAAATTAGGTGGATAGAGCTAAGTGAAGATGTTGAAGATATTGTTAGAGAGATAGTTAAGTTGTTAATAGAGGAGCTTGTAGATGATATAGTTCGTTAG 1752 0.3973 MESKNEPSSVILKLMGLDKVPSQHRPVRNRPKVLSEDYLQKVASISLRMKRSSHQRRSFGTSTGEKKESNNVLKVVKTVSSDANHNESQIVMHGEAGLYEISRLSKSQLDPKDVTFDSRIVVSKVNRGNEENGEFKRNIRRKVGFGYSFARKVPTTKPFADNCGTMTKDDLFQKYWGLSKNASENWSNQNSKNRNINQKDCSEDMNLKASSEKSPSFSSYFNRNDSNHTENCTDLHKLKKRCYGNDLFEKEHTLSQLSSSDSQILQQTCLMNEGVKNDKHEDSSMCKKVAMSLDSSINILVSESKSTVSVIMCGDSDSSSHASNQQETSEIREDSVYSPCTEADTDSLGTYQGAYEPSPISVLDSTFGEDISVISECGGVGGVYDSSEVDDEGLDLNVSSDEDCEKESVLDFDEKKDIIGLSRTEESRDFSYVVEVLTEAGISNTSLFKDFSTWHSAECPISPSVFETLEKKFGEQQLWKRSERRLLFDRINFGLLDILHPSLFIPIWEKPVSRRMNVEPNQNMIEDEMWGLLVSQEKKAGKESADNMLGGEIRWIELSEDVEDIVREIVKLLIEELVDDIVR 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g00543 583 PANTHER AFADIN 1 88 - -
Trre14g00543 583 Pfam Domain of unknown function (DUF4378) 429 580 IPR025486 -
Trre14g00543 583 MobiDBLite consensus disorder prediction 315 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g00543 Trre-Chr14 4410231 4412812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g00543 340 582 TRM (TON1 Recruiting Motif) Superfamily AT2G39435 30.651 1.17e-31 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g00543 - - cam:101499857 642.114